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PLM3_60_coex_sep16_scaffold_675

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_675_1
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12..1202)
DNA (1191bp) protein (397aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=EFTU_ACIC1
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_675_2
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(1222..3360)
DNA (2139bp) protein (713aa)
Elongation factor G Tax=Frankia sp. (strain EAN1pec) RepID=EFG_FRASN
elongation factor G
Tax=RBG_16_Actinobacteria_67_15_curated
PLM3_60_coex_sep16_scaffold_675_3
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3364..3651)
DNA (288bp) protein (96aa)
30S ribosomal protein S7 Tax=Rhodococcus opacus (strain B4) RepID=RS7_RHOOB
30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000255|HAMAP-Rule:MF_00480}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
PLM3_60_coex_sep16_scaffold_675_4
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3662..4036)
DNA (375bp) protein (125aa)
30S ribosomal protein S12 Tax=Frankia RepID=RS12_FRAAA
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
PLM3_60_coex_sep16_scaffold_675_5
Streptomyces avermitilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4448..5269
DNA (822bp) protein (274aa)
Putative glycerol uptake facilitator protein Tax=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) RepID=Q826J3_STRAW
transport integral membrane protein
Putative glycerol uptake facilitator protein {ECO:0000313|EMBL:BAC74911.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /; NCIMB 12804 / NRRL 8165 / MA-4680).;"
PLM3_60_coex_sep16_scaffold_675_6
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

5358..6872
DNA (1515bp) protein (505aa)
glycerol kinase (EC:2.7.1.30) bin=bin9_gal15 species=Anaerobaculum hydrogeniformans genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=bin9_gal15 organism_group=GAL15
glycerol kinase (EC:2.7.1.30)
Tax=CSP1_3_Armatimonadetes
PLM3_60_coex_sep16_scaffold_675_7
Tolypothrix sp. PCC 7601, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

6948..7949
DNA (1002bp) protein (334aa)
dihydroxyacetone kinase subunit DhaK (EC:2.7.1.29)
Dihydroxyacetone kinase, DhaK subunit Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NKW2_ROSCS
Dihydroxyacetone kinase, DhaK subunit {ECO:0000313|EMBL:EKF03221.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix sp. PCC 7601.;"
PLM3_60_coex_sep16_scaffold_675_8
Kocuria polaris, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7953..8585
DNA (633bp) protein (211aa)
hypothetical protein Tax=Kocuria sp. UCD-OTCP RepID=UPI0003669C37
Dihydroxyacetone kinase {ECO:0000313|EMBL:KHD98147.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria polaris.;"
dihydroxyacetone kinase subunit DhaL
PLM3_60_coex_sep16_scaffold_675_9
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8760..10394
DNA (1635bp) protein (545aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI000377AE69
Uncharacterized protein {ECO:0000313|EMBL:ETK37122.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
pdc; pyruvate dehydrogenase (cytochrome)
PLM3_60_coex_sep16_scaffold_675_10
unknown

Not on your lists

comp(10899..11072)
DNA (174bp) protein (58aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_675_11
unknown

Not on your lists

comp(11073..11333)
DNA (261bp) protein (87aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_675_12
Streptomyces toyocaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11449..11724)
DNA (276bp) protein (92aa)
Uncharacterized protein Tax=Streptomyces bottropensis ATCC 25435 RepID=M3DKY7_9ACTO
Membrane protein {ECO:0000313|EMBL:KES05996.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces toyocaensis.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_675_13
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(11800..13014)
DNA (1215bp) protein (405aa)
Putative uncharacterized protein Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NRE9_ROSCS
glpC; sn-glycerol-3-phosphate dehydrogenase subunit C
Uncharacterized protein {ECO:0000313|EMBL:ABU60145.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
PLM3_60_coex_sep16_scaffold_675_14
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(13029..14315)
DNA (1287bp) protein (429aa)
anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC:1.1.5.3)
Glycerol-3-phosphate dehydrogenase, anaerobic, B subunit {ECO:0000313|EMBL:ACL23023.1}; EC=1.1.5.3 {ECO:0000313|EMBL:ACL23023.1};; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
Glycerol-3-phosphate dehydrogenase, anaerobic, B subunit Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8GC49_CHLAD
PLM3_60_coex_sep16_scaffold_675_15
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(14315..15928)
DNA (1614bp) protein (538aa)
FAD dependent oxidoreductase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NRE7_ROSCS
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABU60143.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
PLM3_60_coex_sep16_scaffold_675_16
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(15925..17034)
DNA (1110bp) protein (370aa)
NAD-dependent epimerase/dehydratase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FDV4_CONWI
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ADB51570.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3_60_coex_sep16_scaffold_675_17
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(17039..17593)
DNA (555bp) protein (185aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=Paenibacillus sp. HW567 RepID=UPI0003644590
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_675_18
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17692..19314)
DNA (1623bp) protein (541aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
hypothetical protein Tax=Nocardiopsis potens RepID=UPI000362DE7A
putative phosphoenolpyruvate-protein phosphotransferase
PLM3_60_coex_sep16_scaffold_675_19
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19292..19573)
DNA (282bp) protein (94aa)
phosphotransferase Tax=Amycolatopsis RepID=UPI0002627E93
ptsH; phosphotransferase system, phosphocarrier protein HPr
Phosphotransferase system, phosphocarrier protein HPr {ECO:0000313|EMBL:AIJ24953.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM3_60_coex_sep16_scaffold_675_20
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19657..20295)
DNA (639bp) protein (213aa)
L-fuculose 1-phosphate aldolase {ECO:0000313|EMBL:ABL00148.1}; EC=4.1.2.17 {ECO:0000313|EMBL:ABL00148.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
L-fuculose 1-phosphate aldolase Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AS27_PELPD
class II aldolase/adducin family protein
PLM3_60_coex_sep16_scaffold_675_21
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

20451..22004
DNA (1554bp) protein (518aa)
hsdR; type I restriction enzyme EcoAI R protein (R.EcoAI) (EC:3.1.21.3)
Type I restriction enzyme EcoAI R protein (R.EcoAI) {ECO:0000313|EMBL:CBE69023.1}; EC=3.1.21.3 {ECO:0000313|EMBL:CBE69023.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Type I restriction enzyme EcoAI R protein (R.EcoAI) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGZ2_9BACT
PLM3_60_coex_sep16_scaffold_675_22
Mycobacterium avium, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21967..22845
DNA (879bp) protein (293aa)
Type I restriction-modification system, R subunit Tax=Mycobacterium avium RepID=A0QMK6_MYCA1
DEAD/DEAH box helicase
DEAD/DEAH box helicase {ECO:0000313|EMBL:ETB34684.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium avium subsp. hominissuis 10-5606.;"
PLM3_60_coex_sep16_scaffold_675_23
Mycobacterium avium, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23157..23510
DNA (354bp) protein (118aa)
Uncharacterized protein Tax=Mycobacterium avium RepID=A0QMK7_MYCA1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETB24276.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium avium subsp. avium 11-4751.;"
PLM3_60_coex_sep16_scaffold_675_24
Mycobacterium avium, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23510..24370
DNA (861bp) protein (287aa)
Uncharacterized protein Tax=Streptomyces niveus NCIMB 11891 RepID=V6K9E8_STRNV
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETB24277.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium avium subsp. avium 11-4751.;"
PLM3_60_coex_sep16_scaffold_675_25
Mycobacterium avium, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24382..25875
DNA (1494bp) protein (498aa)
type I restriction-modification system, M subunit (EC:2.1.1.72)
Type I restriction-modification system, M subunit Tax=Mycobacterium avium RepID=A0QMK9_MYCA1
N-6 DNA Methylase family protein {ECO:0000313|EMBL:EUA39038.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium avium subsp. avium 2285 (R).;"
PLM3_60_coex_sep16_scaffold_675_26
Streptomyces sp. SM8, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26496..27017
DNA (522bp) protein (174aa)
Uncharacterized protein Tax=Streptomyces sp. SM8 RepID=K1VXY1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EKC94868.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. SM8.;"
type I restriction-modification enzyme, specificity subunit
PLM3_60_coex_sep16_scaffold_675_27
Nocardia cyriacigeorgica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27024..27701)
DNA (678bp) protein (226aa)
DNA repair protein RadC Tax=Nocardia cyriacigeorgica (strain GUH-2) RepID=H6R1S9_NOCCG
radC; DNA repair protein RadC
DNA repair protein RadC {ECO:0000313|EMBL:CCF61813.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia cyriacigeorgica (strain GUH-2).;"
PLM3_60_coex_sep16_scaffold_675_28
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27800..31783)
DNA (3984bp) protein (1328aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=RPOC_ACIC1
PLM3_60_coex_sep16_scaffold_675_29
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31785..35240)
DNA (3456bp) protein (1152aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:CCG05130.1}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:CCG05130.1};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta Tax=Frankia sp. CN3 RepID=G6HEP6_9ACTO
PLM3_60_coex_sep16_scaffold_675_30
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(35498..35890)
DNA (393bp) protein (131aa)
50S ribosomal protein L7/L12 Tax=Frankia sp. BCU110501 RepID=UPI00036999FC
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000255|HAMAP-Rule:MF_00368}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
Displaying items 1-30 of 32 in total

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