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PLM3_60_coex_sep16_scaffold_925

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_925_1
unknown

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3..197
DNA (195bp) protein (65aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_925_2
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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comp(169..498)
DNA (330bp) protein (110aa)
membrane protein bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
membrane protein
Tax=RBG_16_Armatimonadetes_67_12_curated
PLM3_60_coex_sep16_scaffold_925_3
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(528..1400)
DNA (873bp) protein (291aa)
Uncharacterized protein Tax=Frankia alni (strain ACN14a) RepID=Q0RSC3_FRAAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ59541.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
PLM3_60_coex_sep16_scaffold_925_4
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(1385..2038)
DNA (654bp) protein (218aa)
Uncharacterized protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TFH2_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFH88652.1}; Flags: Precursor;; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_925_5
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(2035..2508)
DNA (474bp) protein (158aa)
Putative MarR-family regulatory protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AT56_STRRD
MarR family transcriptional regulator
Putative MarR-family regulatory protein {ECO:0000313|EMBL:ACZ84732.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_60_coex_sep16_scaffold_925_6
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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2556..3332
DNA (777bp) protein (259aa)
N-acetyltransferase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AUQ7_STRRD
N-acetyltransferase
N-acetyltransferase {ECO:0000313|EMBL:ACZ84919.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_60_coex_sep16_scaffold_925_7
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3441..3692)
DNA (252bp) protein (84aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AWV5_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ88883.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_60_coex_sep16_scaffold_925_8
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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3756..4457
DNA (702bp) protein (234aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2PRJ5_9ACTO
ArsR family transcriptional regulator {ECO:0000313|EMBL:ETK32689.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
ArsR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_925_9
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4454..5089)
DNA (636bp) protein (212aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
Adenylate kinase Tax=Frankia sp. EUN1f RepID=D3CWY8_9ACTO
adenylate kinase
PLM3_60_coex_sep16_scaffold_925_10
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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5154..5846
DNA (693bp) protein (231aa)
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
Deoxyribose-phosphate aldolase Tax=Roseiflexus sp. (strain RS-1) RepID=A5US88_ROSS1
PLM3_60_coex_sep16_scaffold_925_11
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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5818..6777
DNA (960bp) protein (320aa)
ROK family protein; K00845 glucokinase [EC:2.7.1.2] bin=bin8_Chloro species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
RpiR family transcriptional regulator (EC:2.7.1.2)
Tax=CSP1_4_Chloroflexi
PLM3_60_coex_sep16_scaffold_925_12

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comp(6699..7457)
DNA (759bp) protein (253aa)
Transcriptional regulator, GntR family Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LSD7_ACIC1
Uncharacterized protein {ECO:0000313|EMBL:KGA17857.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
GntR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_925_13
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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7562..8359
DNA (798bp) protein (266aa)
hypothetical protein bin=bin8_Chloro species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
Tax=CSP1_4_Chloroflexi
PLM3_60_coex_sep16_scaffold_925_14

Not on your lists

8377..9450
DNA (1074bp) protein (358aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LSE0_ACIC1
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48674.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
periplasmic binding protein/LacI transcriptional regulator
PLM3_60_coex_sep16_scaffold_925_15

Not on your lists

9507..10988
DNA (1482bp) protein (494aa)
hypothetical protein Tax=Saccharomonospora saliphila RepID=UPI00037B65F1
Uncharacterized protein {ECO:0000313|EMBL:KGA17860.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
ABC transporter-like protein
PLM3_60_coex_sep16_scaffold_925_16
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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10988..11986
DNA (999bp) protein (333aa)
Monosaccharide ABC transporter membrane protein, CUT2 family Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LSE2_ACIC1
inner-membrane translocator
Monosaccharide ABC transporter membrane protein, CUT2 family {ECO:0000313|EMBL:ABK52352.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_925_17
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

11983..12978
DNA (996bp) protein (332aa)
Putative ABC transporter permease protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6W9_CALAS
ABC transporter permease
Putative ABC transporter permease protein {ECO:0000313|EMBL:BAM01007.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3_60_coex_sep16_scaffold_925_18
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

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comp(12970..14169)
DNA (1200bp) protein (400aa)
hypothetical protein Tax=Saccharomonospora saliphila RepID=UPI00036BDDF0
oxidoreductase domain-containing protein
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3_60_coex_sep16_scaffold_925_19
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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14241..15506
DNA (1266bp) protein (422aa)
hypothetical protein Tax=Nocardiopsis potens RepID=UPI000346795A
Dehydrogenase {ECO:0000313|EMBL:KIH96411.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
oxidoreductase domain-containing protein
PLM3_60_coex_sep16_scaffold_925_20
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(15544..16302)
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR Tax=Roseiflexus sp. (strain RS-1) RepID=A5UW89_ROSS1
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABQ90892.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
PLM3_60_coex_sep16_scaffold_925_21
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(16299..16799)
DNA (501bp) protein (167aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6X7_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM01015.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
Displaying 21 items

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