ggKbase home page

PLM3_5_b1_sep16_scaffold_4434_5

Organism: PLM3_5_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 41 / 55 MC: 3 BSCG 44 / 51 MC: 5 ASCG 12 / 38 MC: 3
Location: comp(5232..6149)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.6
  • Coverage: 306.0
  • Bit_score: 282
  • Evalue 4.20e-73
Pseudouridine synthase Tax=Oscillibacter sp. CAG:241 RepID=R6GHL9_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 52.6
  • Coverage: 306.0
  • Bit_score: 282
  • Evalue 3.00e-73
RluA family pseudouridine synthase similarity KEGG
DB: KEGG
  • Identity: 49.3
  • Coverage: 302.0
  • Bit_score: 273
  • Evalue 3.90e-71

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Oscillibacter sp. CAG:241 → Oscillibacter → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 918
TTGACCCGGCCGCCCGACCCGGACCAGGTCGCCGGGCGGCGCCTCGACGAGGTGGTCGCGGAGCTGGCCGGGACCTCACGGGCCCAGGCGGCCCGCTGGGCCAGCGACGGCCTGGTCACCGTCGACGGCCGGCCCCGGCCCAAGTCGTACCGGCTCCGGGGCGGCGAAGGGCTCGCCTGGACGCCGCCGCCGGCCCCGCCCTCGGGCGAGCCGCAGGCCGAGGACCGGCCGCTGACCGTCCGCTACGAGGACGACCGGCTGCTGGTGGTGGCCAAGCCGGCCGGCCTGGTCGTCCACCCCGGCCCCGGCCACCCGACCGGCACCCTGGTCAACGCCCTCCTCGGGCGGCCAGGGACCAGCCTGTCGGCCGGCGGGGGAGCCGCCGACCGTCCCGGCATCGTCCACCGCCTCGACAAGGACACCTCGGGGCTGCTGCTGGTGGCCAAGGACGACGCCACCCACCTGGCCCTGGCCCGCGACCTGGCCGACCACCGGGTCGAGCGCCAGTACCTGGCCCTGGTCCAGGGCCGCCTCCCGGCCTCCTCGGGCACGGTCGACGCGCCCGTCGGCCGCCACCCCCGGGACCGCAAGCGCATGGCCGTCGTCCCCAGCGGCCGCCACGCCGTCACCCACTGGCGGGTGCTGGAGACCTTCCCGGCCGTCCAGCTGGCCGAGGCCACCCTTGAGACCGGCCGCACCCACCAGGTCCGGGTCCACCTGGCCTCGCTGCGCCACCCCCTGGCCGGCGACCGGACCTACGGCGCCGACCCCACCCTGGCGGCCAGGCTCGGCCTGGATCGCCCCTTCCTCCATGCCTGGCGCCTGGCCTTCGACCACCCCGTCGACGGGACCCGGGTCGAGCTCACCGAGTCCCTCCCGCCCGACCTCCAGTCGGTCCTCGACCGCCTCCGCGGCTAG
PROTEIN sequence
Length: 306
LTRPPDPDQVAGRRLDEVVAELAGTSRAQAARWASDGLVTVDGRPRPKSYRLRGGEGLAWTPPPAPPSGEPQAEDRPLTVRYEDDRLLVVAKPAGLVVHPGPGHPTGTLVNALLGRPGTSLSAGGGAADRPGIVHRLDKDTSGLLLVAKDDATHLALARDLADHRVERQYLALVQGRLPASSGTVDAPVGRHPRDRKRMAVVPSGRHAVTHWRVLETFPAVQLAEATLETGRTHQVRVHLASLRHPLAGDRTYGADPTLAARLGLDRPFLHAWRLAFDHPVDGTRVELTESLPPDLQSVLDRLRG*