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PLM3_30_b1_sep16_scaffold_17

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_17_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(1..654)
DNA (654bp) protein (218aa)
Putative mechanosensitive ion channel Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMN7_NITGG
mechanosensitive ion channel
Putative mechanosensitive ion channel {ECO:0000313|EMBL:AFU60442.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_17_2
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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787..1119
DNA (333bp) protein (111aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2EAN2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16046.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_17_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1272..1523
DNA (252bp) protein (84aa)
rpoH; DNA-directed RNA polymerase subunit H (EC:2.7.7.6)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
DNA-directed RNA polymerase subunit H Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE60_NITGG
PLM3_30_b1_sep16_scaffold_17_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1527..4877
DNA (3351bp) protein (1117aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU000431};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
rpoB; DNA-directed RNA polymerase subunit B (EC:2.7.7.6)
DNA-directed RNA polymerase Tax=Candidatus Nitrososphaera gargensis RepID=K0ILI7_NITGG
PLM3_30_b1_sep16_scaffold_17_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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4884..8708
DNA (3825bp) protein (1275aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;"
rpoA; DNA-directed RNA polymerase subunit A (EC:2.7.7.6)
DNA-directed RNA polymerase Tax=Candidatus Nitrososphaera gargensis RepID=K0IC33_NITGG
PLM3_30_b1_sep16_scaffold_17_6
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8677..8988
DNA (312bp) protein (104aa)
50S ribosomal protein L30e Tax=Candidatus Nitrososphaera gargensis RepID=K0I766_NITGG
rpl30e; 50S ribosomal protein L30e
50S ribosomal protein L30e {ECO:0000313|EMBL:AIC15587.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_17_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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9168..9587
DNA (420bp) protein (140aa)
Archaeal NusA family KH domain containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH19_NITGG
archaeal NusA family KH domain containing protein
Probable transcription termination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_17_8
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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9700..10038
DNA (339bp) protein (113aa)
30S ribosomal protein S12 Tax=Candidatus Nitrososphaera gargensis RepID=K0IE68_NITGG
SSU ribosomal protein S12P
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU004490}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_17_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10044..10646
DNA (603bp) protein (201aa)
30S ribosomal protein S7 Tax=Candidatus Nitrososphaera gargensis RepID=K0ILJ0_NITGG
rps7p; 30S ribosomal protein S7p
R-protein S7p {ECO:0000313|EMBL:ADK26002.1}; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;"
PLM3_30_b1_sep16_scaffold_17_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10744..11880
DNA (1137bp) protein (379aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC41_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57110.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_17_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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11911..13128
DNA (1218bp) protein (406aa)
Replication factor C large subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I772_NITGG
rfcL; replication factor C large subunit
Replication factor C large subunit {ECO:0000313|EMBL:AFU57111.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_17_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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13250..13462
DNA (213bp) protein (71aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC66_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57135.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_17_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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13591..15132
DNA (1542bp) protein (514aa)
accB; acetyl-CoA/propionyl-CoA carboxylase, carboxyltransferase subunit (EC:6.4.1.3)
Acetyl-CoA/ propionyl-CoA carboxylase, carboxyltransferase subunit {ECO:0000313|EMBL:AFU57136.1}; EC=6.4.1.3 {ECO:0000313|EMBL:AFU57136.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Acetyl-CoA/ propionyl-CoA carboxylase, carboxyltransferase subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I798_NITGG
PLM3_30_b1_sep16_scaffold_17_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15145..16668
DNA (1524bp) protein (508aa)
accC; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylation subunit (EC:6.3.4.14 6.4.1.2)
Acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylation subunit {ECO:0000313|EMBL:AFU57137.1}; EC=6.3.4.14 {ECO:0000313|EMBL:AFU57137.1};; EC=6.4.1.2 {ECO:0000313|EMBL:AFU57137.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylation subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH60_NITGG
PLM3_30_b1_sep16_scaffold_17_15
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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16658..17170
DNA (513bp) protein (171aa)
Putative biotin/lipoyl attachment domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEA5_NITGG
acetyl/propionyl-CoA carboxylase, alpha subunit
Acetyl/propionyl-CoA carboxylase, alpha subunit {ECO:0000313|EMBL:AIF84815.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_17_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(17222..17701)
DNA (480bp) protein (160aa)
Alkyl hydroperoxide reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC71_NITGG
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:AFU57140.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_17_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(17783..18616)
DNA (834bp) protein (278aa)
Putative ATP-utilizing enzyme of the PP-loop superfamily Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH62_NITGG
ATP-utilizing enzyme of the PP-loop superfamily
Putative ATP-utilizing enzyme of the PP-loop superfamily {ECO:0000313|EMBL:AFU57142.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_17_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(18616..19857)
DNA (1242bp) protein (414aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEB0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57143.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_17_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(20155..20784)
DNA (630bp) protein (210aa)
PHP domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IAR4_NITGG
PHP domain-containing protein
PHP domain-containing protein {ECO:0000313|EMBL:AFU58426.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_17_20
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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20905..21885
DNA (981bp) protein (327aa)
Putative carbamoyl-phosphate synthase, large chain Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF60_NITGG
carbamoyl-phosphate synthase large subunit
Putative carbamoyl-phosphate synthase, large chain {ECO:0000313|EMBL:AFU58425.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_17_21
RIFOXYB1_FULL_OP11_Amesbacteria_44_23_curated, Amesbacteria, Microgenomates, Bacteria

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comp(22106..23542)
DNA (1437bp) protein (479aa)
glycosyl transferase Tax=Streptomyces canus RepID=UPI00035C7AA5
putative glycosyltransferase
Tax=RIFOXYB1_FULL_OP11_Amesbacteria_44_23_curated
PLM3_30_b1_sep16_scaffold_17_22
uncultured crenarchaeote, Crenarchaeota, Archaea

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comp(23682..24968)
DNA (1287bp) protein (429aa)
Putative conserved protein Tax=uncultured crenarchaeote RepID=Q2V9D9_9CREN
Putative conserved protein {ECO:0000313|EMBL:ABB88985.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
F5/8 type C domain-containing protein
PLM3_30_b1_sep16_scaffold_17_23
unknown

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comp(25385..25630)
DNA (246bp) protein (82aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_17_24
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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25884..26897
DNA (1014bp) protein (338aa)
Family 2 glycosyl transferase Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2ZLA0_9PSEU
Family 2 glycosyl transferase {ECO:0000313|EMBL:EME61678.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;"
PLM3_30_b1_sep16_scaffold_17_25
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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27084..28133
DNA (1050bp) protein (350aa)
Putative polysaccharide transporter Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIG7_NITGG
putative Polysaccharide biosynthesis protein
Putative Polysaccharide biosynthesis protein {ECO:0000313|EMBL:AIC16436.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_17_26
Dictyostelium discoideum, Dictyostelium, Dictyosteliida, Eukaryota

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comp(28213..28827)
DNA (615bp) protein (205aa)
Putative uncharacterized protein Tax=Dictyostelium discoideum RepID=Q55FN0_DICDI
Uncharacterized protein {ECO:0000313|EMBL:EAL73468.1}; species="Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium.;" source="Dictyostelium discoideum (Slime mold).;"
PLM3_30_b1_sep16_scaffold_17_27
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(29030..29665)
DNA (636bp) protein (212aa)
DedA family protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0III1_NITGG
DedA family protein
DedA family protein {ECO:0000313|EMBL:AIC14513.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_17_28
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(29692..31134)
DNA (1443bp) protein (481aa)
proS; proline--tRNA ligase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Proline--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN69_NITGG
PLM3_30_b1_sep16_scaffold_17_29
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(31167..31460)
DNA (294bp) protein (98aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC02_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58856.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_17_30
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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31628..32041
DNA (414bp) protein (138aa)
Putative chaperone protein DnaJ Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN14_NITGG
DnaJ-class molecular chaperone with C-terminal Zn finger domain
Putative chaperone protein DnaJ {ECO:0000313|EMBL:AIC14767.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Displaying items 1-30 of 51 in total

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