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PLM3_30_b1_sep16_scaffold_289

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_289_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1..303
DNA (303bp) protein (101aa)
Putative beta-lactamase domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM20_NITGG
beta-lactamase domain-containing protein
Putative beta-lactamase domain-containing protein {ECO:0000313|EMBL:AFU59902.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_289_2

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808..1194
DNA (387bp) protein (129aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK70274.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_30_b1_sep16_scaffold_289_3
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1427..1801)
DNA (375bp) protein (125aa)
Putative uncharacterized protein Tax=Arthrobacter globiformis NBRC 12137 RepID=H0QN45_ARTGO
Glyoxalase {ECO:0000313|EMBL:KIH96739.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_289_4
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

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comp(2583..3473)
DNA (891bp) protein (297aa)
lipoic acid synthetase (EC:2.8.1.8)
hypothetical protein Tax=Crenarchaeota archaeon SCGC AAA471-B05 RepID=UPI0003690C27
Tax=RBG_16_KB1_OP1_55_9_curated
PLM3_30_b1_sep16_scaffold_289_5

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3564..4640
DNA (1077bp) protein (359aa)
Probable aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_115_G03.;"
Aminomethyltransferase Tax=Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) RepID=J7J3W5_DESMD
glycine cleavage system T protein
PLM3_30_b1_sep16_scaffold_289_6

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4643..5035
DNA (393bp) protein (131aa)
Glycine cleavage system H protein Tax=uncultured candidate division OP1 bacterium RepID=H5SJ52_9BACT
Probable glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_115_G03.;"
glycine cleavage system H protein
PLM3_30_b1_sep16_scaffold_289_7
uncultured marine crenarchaeote HF4000_ANIW93I24, Nitrosopumilales, Thaumarchaeota, Archaea

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5019..6386
DNA (1368bp) protein (456aa)
gcvPA; glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) (EC:1.4.4.2)
Putative glycine cleavage system P-protein Tax=uncultured marine crenarchaeote HF4000_ANIW93I24 RepID=B3T2Y7_9ARCH
Putative glycine cleavage system P-protein {ECO:0000313|EMBL:ABZ06946.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; environmental samples.;" source="uncultured marine crenarchaeote HF4000_ANIW93I24.;"
PLM3_30_b1_sep16_scaffold_289_8
uncultured marine crenarchaeote HF4000_ANIW93I24, Nitrosopumilales, Thaumarchaeota, Archaea

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6383..7876
DNA (1494bp) protein (498aa)
gcvPB; glycine dehydrogenase subunit 2 (EC:1.4.4.2)
Putative glycine cleavage system P-protein Tax=uncultured marine crenarchaeote HF4000_ANIW93I24 RepID=B3T2Y8_9ARCH
Putative glycine cleavage system P-protein {ECO:0000313|EMBL:ABZ06947.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; environmental samples.;" source="uncultured marine crenarchaeote HF4000_ANIW93I24.;"
PLM3_30_b1_sep16_scaffold_289_9

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7940..8158
DNA (219bp) protein (73aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_ANIW93I24 RepID=B3T2Y9_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:AIF19517.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_87_A02.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_289_10
uncultured marine crenarchaeote HF4000_ANIW93I24, Nitrosopumilales, Thaumarchaeota, Archaea

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8276..8953
DNA (678bp) protein (226aa)
lipoate-protein ligase A (EC:2.7.7.63)
Putative biotin/lipoate A/B protein ligase family protein Tax=uncultured marine crenarchaeote HF4000_ANIW93I24 RepID=B3T2Z0_9ARCH
Putative biotin/lipoate A/B protein ligase family protein {ECO:0000313|EMBL:ABZ06949.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; environmental samples.;" source="uncultured marine crenarchaeote HF4000_ANIW93I24.;"
PLM3_30_b1_sep16_scaffold_289_11
uncultured marine crenarchaeote HF4000_ANIW93I24, Nitrosopumilales, Thaumarchaeota, Archaea

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9131..10450
DNA (1320bp) protein (440aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; species="Archaea; Thaumarchaeota; Nitrosopumilales; environmental samples.;" source="uncultured marine crenarchaeote HF4000_ANIW93I24.;"
Putative Pyridine nucleotide-disulphide oxidoreductase Tax=uncultured marine crenarchaeote HF4000_ANIW93I24 RepID=B3T2Z1_9ARCH
dihydrolipoamide dehydrogenase
PLM3_30_b1_sep16_scaffold_289_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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10954..12447
DNA (1494bp) protein (498aa)
Multicopper oxidase type 2 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F694_CONWI
multicopper oxidase type 2
Multicopper oxidase type 2 {ECO:0000313|EMBL:ADB48767.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3_30_b1_sep16_scaffold_289_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12511..12609)
DNA (99bp) protein (33aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ79_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58287.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_289_14
unknown

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12973..13161
DNA (189bp) protein (63aa)
PLM3_30_b1_sep16_scaffold_289_15
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(13165..13698)
DNA (534bp) protein (178aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82529.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_289_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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13740..14063
DNA (324bp) protein (108aa)
Putative transcriptional regulator, ArsR family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP30_NITGG
arsR family transcriptional regulator
Putative transcriptional regulator, ArsR family {ECO:0000313|EMBL:AFU60409.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_289_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(14286..14891)
DNA (606bp) protein (202aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHT0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59495.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_289_trna_2
unknown

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comp(14943..15016)
DNA (74bp)
transferRNA Pro
PLM3_30_b1_sep16_scaffold_289_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(15101..16402)
DNA (1302bp) protein (434aa)
Putative FAD dependent oxidoreductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILD0_NITGG
FAD dependent oxidoreductase
Putative FAD dependent oxidoreductase {ECO:0000313|EMBL:AFU60328.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_289_19
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(16487..17062)
DNA (576bp) protein (192aa)
NUDIX domain-containing protein Tax=Firmicutes bacterium CAG:270 RepID=R7BVA7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16357.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_289_20
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(17191..17469)
DNA (279bp) protein (93aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INN3_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82907.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_289_21
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(17611..19506)
DNA (1896bp) protein (632aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILG2_NITGG
bax1; putative XPB associated nuclease Bax1
Putative XPB associated nuclease Bax1 {ECO:0000313|EMBL:AIC16468.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_289_22
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19713..20918
DNA (1206bp) protein (402aa)
DNA repair and recombination protein RadA Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJZ6_NITGG
radA1; DNA repair and recombination protein
DNA repair and recombination protein RadA {ECO:0000256|HAMAP-Rule:MF_00348}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_289_23
unknown

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comp(21020..21139)
DNA (120bp) protein (40aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_289_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(21292..21504)
DNA (213bp) protein (71aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJU9_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59498.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_289_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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21648..22514
DNA (867bp) protein (289aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INV0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60009.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_289_trna_1
unknown

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comp(22394..22468)
DNA (75bp)
transferRNA Arg
PLM3_30_b1_sep16_scaffold_289_26
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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22607..23791
DNA (1185bp) protein (395aa)
aminotransferase (EC:2.6.1.-)
Aminotransferase {ECO:0000313|EMBL:AIC17024.1}; EC=2.6.1.- {ECO:0000313|EMBL:AIC17024.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Aminotransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHQ8_NITGG
PLM3_30_b1_sep16_scaffold_289_27
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(23853..24068)
DNA (216bp) protein (72aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHR5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF83060.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_289_28
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(24047..24667)
DNA (621bp) protein (207aa)
Putative NADPH-dependent F420 reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDK5_NITGG
NADPH-dependent F420 reductase
Putative NADPH-dependent F420 reductase {ECO:0000313|EMBL:AFU59481.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Displaying items 1-30 of 33 in total

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