ggKbase home page

PLM3_30_b1_sep16_scaffold_541

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_541_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


331..993
DNA (663bp) protein (221aa)
50S ribosomal protein L1 Tax=Candidatus Nitrososphaera gargensis RepID=K0I6Z5_NITGG
rpl1p; 50S ribosomal protein L1p
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318, ECO:0000256|SAAS:SAAS00010815}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_541_2
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


1005..1892
DNA (888bp) protein (296aa)
50S ribosomal protein L10 Tax=Candidatus Nitrososphaera gargensis RepID=K0IGU2_NITGG
LSU ribosomal protein L10P
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00280}; Acidic ribosomal protein P0 homolog {ECO:0000256|HAMAP-Rule:MF_00280}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_541_3
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(2141..2452)
DNA (312bp) protein (104aa)
50S ribosomal protein L12 Tax=Candidatus Nitrososphaera gargensis RepID=K0IF01_NITGG
LSU ribosomal protein L12AE
50S ribosomal protein L12 {ECO:0000256|HAMAP-Rule:MF_01478}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_541_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(2496..3002)
DNA (507bp) protein (169aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INH2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59369.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_541_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

3145..3699
DNA (555bp) protein (185aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative 2'-5' RNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID41_NITGG
2'-5' RNA ligase
PLM3_30_b1_sep16_scaffold_541_6
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


3696..5069
DNA (1374bp) protein (458aa)
CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01264}; EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01264};; CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA CCA-pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA adenylyl-/cytidylyl- transferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA-NT {ECO:0000256|HAMAP-Rule:MF_01264}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
cca; CCA-adding enzyme (EC:2.7.7.72)
CCA-adding enzyme Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KLY1_9ARCH
PLM3_30_b1_sep16_scaffold_541_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

5047..5793
DNA (747bp) protein (249aa)
Putative Ser/Thr protein kinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0II03_NITGG
Ser/Thr protein kinase
Putative Ser/Thr protein kinase {ECO:0000313|EMBL:AFU57582.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_541_8
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

5936..6631
DNA (696bp) protein (232aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_APKG3K8 RepID=B3T7Y9_9ARCH
ATP-grasp superfamily enzyme
ATP-grasp superfamily enzyme {ECO:0000313|EMBL:AIF85083.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_541_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(6710..7234)
DNA (525bp) protein (175aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM59_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57584.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_541_10
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

7396..7686
DNA (291bp) protein (97aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGA8_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82502.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_541_11

Not on your lists

comp(7801..8133)
DNA (333bp) protein (111aa)
Uncharacterized protein Tax=uncultured archaeon RepID=I3RKN4_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK24894.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
PLM3_30_b1_sep16_scaffold_541_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

8259..8591
DNA (333bp) protein (111aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHH0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58353.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_541_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(8980..10008)
DNA (1029bp) protein (343aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJF7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58397.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_541_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

10161..11306
DNA (1146bp) protein (382aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHL3_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58398.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_541_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


11809..12201
DNA (393bp) protein (131aa)
30S ribosomal protein S6e Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM30_NITGG
rps6e; 30S ribosomal protein S6e
30S ribosomal protein S6e {ECO:0000256|HAMAP-Rule:MF_00512, ECO:0000256|SAAS:SAAS00018829}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_541_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


12293..13555
DNA (1263bp) protein (421aa)
Translation initiation factor 2, subunit gamma Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICY3_NITGG
eif2g; translation initiation factor 2, subunit gamma
Translation initiation factor 2, subunit gamma {ECO:0000313|EMBL:AFU57525.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_541_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(13617..14693)
DNA (1077bp) protein (359aa)
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Phosphoribosylformylglycinamidine cyclo-ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I7S9_NITGG
PLM3_30_b1_sep16_scaffold_541_18
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

14788..15618
DNA (831bp) protein (277aa)
Putative transcriptional regulator, ArsR family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH22_NITGG
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AIF84242.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_541_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(15685..17085)
DNA (1401bp) protein (467aa)
trpE; anthranilate synthase component 1 (EC:4.1.3.27)
Anthranilate synthase component 1 {ECO:0000313|EMBL:AFU58696.1}; EC=4.1.3.27 {ECO:0000313|EMBL:AFU58696.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Anthranilate synthase component 1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBR4_NITGG
PLM3_30_b1_sep16_scaffold_541_20
unknown

Not on your lists

comp(17339..17746)
DNA (408bp) protein (136aa)

This feature has no annotations

Displaying 20 items

View Taxonomy