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PLM3_30_b1_sep16_scaffold_782

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_782_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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248..1678
DNA (1431bp) protein (477aa)
Putative FeS cluster assembly protein sufD Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIT6_NITGG
sufD; FeS cluster assembly protein sufD
Putative FeS cluster assembly protein sufD {ECO:0000313|EMBL:AFU58027.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_782_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1705..2019
DNA (315bp) protein (105aa)
Rieske [2Fe-2S] iron-sulfur domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGR4_NITGG
rieske [2Fe-2S] iron-sulfur domain-containing protein
Rieske [2Fe-2S] iron-sulfur domain-containing protein {ECO:0000313|EMBL:AFU58028.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_782_3

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comp(2029..2562)
DNA (534bp) protein (178aa)
signal peptidase I (EC:3.4.21.89)
Peptidase S26B, signal peptidase Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KL78_9ARCH
Peptidase S26B, signal peptidase (SEC11, sipW) {ECO:0000313|EMBL:AIF00152.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_12_C10.;"
PLM3_30_b1_sep16_scaffold_782_4
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2664..3077
DNA (414bp) protein (138aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM21_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15897.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_782_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3228..3479)
DNA (252bp) protein (84aa)
50S ribosomal protein L15e Tax=Candidatus Nitrososphaera gargensis RepID=K0IDZ5_NITGG
R-protein L15e {ECO:0000313|EMBL:ADK26033.1}; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;"
rpl15e; 50S ribosomal protein L15e
PLM3_30_b1_sep16_scaffold_782_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3583..4515)
DNA (933bp) protein (311aa)
serA; 2-hydroxyacid dehydrogenase (EC:1.1.1.95)
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:AFU59597.1}; EC=1.1.1.95 {ECO:0000313|EMBL:AFU59597.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
2-hydroxyacid dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILP9_NITGG
PLM3_30_b1_sep16_scaffold_782_7
unknown

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comp(4561..4998)
DNA (438bp) protein (146aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_782_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5040..6428)
DNA (1389bp) protein (463aa)
fumC; fumarate hydratase (EC:4.3.1.1)
Putative fumarate hydratase {ECO:0000313|EMBL:AFU59599.1}; EC=4.3.1.1 {ECO:0000313|EMBL:AFU59599.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative fumarate hydratase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INL8_NITGG
PLM3_30_b1_sep16_scaffold_782_9

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comp(6548..6967)
DNA (420bp) protein (140aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KN21_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKM14661.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
secondary thiamine-phosphate synthase enzyme
PLM3_30_b1_sep16_scaffold_782_10
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7063..8676
DNA (1614bp) protein (538aa)
Putative streptogramin lyase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN59_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF83713.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_782_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8678..9865)
DNA (1188bp) protein (396aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Phosphoglycerate kinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKB7_NITGG
PLM3_30_b1_sep16_scaffold_782_12
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9971..10309)
DNA (339bp) protein (113aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJN5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84059.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_782_13
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(10766..11281)
DNA (516bp) protein (172aa)
50S ribosomal protein L10e Tax=Candidatus Nitrososphaera gargensis RepID=K0IIF7_NITGG
ribosomal protein L16/L10E
Ribosomal protein L16/L10E {ECO:0000313|EMBL:AIF83741.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3_30_b1_sep16_scaffold_782_14
uncultured crenarchaeote 76h13, Crenarchaeota, Archaea

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11336..11932
DNA (597bp) protein (199aa)
endA1; putative tRNA-splicing endonuclease (EC:4.6.1.16)
tRNA intron endonuclease Tax=uncultured crenarchaeote 76h13 RepID=D4N791_9CREN
tRNA intron endonuclease {ECO:0000313|EMBL:ACY24577.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 76h13.;"
PLM3_30_b1_sep16_scaffold_782_trna_1
unknown

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comp(12321..12396)
DNA (76bp)
transferRNA Glu
PLM3_30_b1_sep16_scaffold_782_15
uncultured crenarchaeote 76h13, Crenarchaeota, Archaea

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12656..13732
DNA (1077bp) protein (359aa)
Radical SAM domain-containing protein Tax=uncultured crenarchaeote 76h13 RepID=D4N789_9CREN
Radical SAM domain-containing protein {ECO:0000313|EMBL:ACY24575.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 76h13.;"
radical SAM domain-containing protein
PLM3_30_b1_sep16_scaffold_782_16
uncultured crenarchaeote 76h13, Crenarchaeota, Archaea

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13956..14828
DNA (873bp) protein (291aa)
ADP-dependent (S)-NAD(P)H-hydrate dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; EC=4.2.1.136 {ECO:0000256|HAMAP-Rule:MF_01965};; ADP-dependent NAD(P)HX dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 76h13.;"
ADP-dependent (S)-NAD(P)H-hydrate dehydratase Tax=uncultured crenarchaeote 76h13 RepID=D4N788_9CREN
carbohydrate kinase
PLM3_30_b1_sep16_scaffold_782_17
uncultured crenarchaeote 76h13, Crenarchaeota, Archaea

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14930..15871
DNA (942bp) protein (314aa)
Uncharacterized conserved protein Tax=uncultured crenarchaeote 76h13 RepID=D4N787_9CREN
Uncharacterized conserved protein {ECO:0000313|EMBL:ACY24573.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 76h13.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_782_18
uncultured crenarchaeote 76h13, Crenarchaeota, Archaea

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comp(15940..17154)
DNA (1215bp) protein (405aa)
Sodium/hydrogen exchanger Tax=uncultured crenarchaeote 76h13 RepID=D4N786_9CREN
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ACY24572.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 76h13.;"
Kef-type K+ transport system, predicted NAD-binding component
PLM3_30_b1_sep16_scaffold_782_19
uncultured crenarchaeote 76h13, Crenarchaeota, Archaea

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comp(17206..17361)
DNA (156bp) protein (52aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote 76h13 RepID=D4N785_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:ACY24571.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 76h13.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_782_20
uncultured crenarchaeote 76h13, Crenarchaeota, Archaea

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17831..18394
DNA (564bp) protein (188aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote 76h13 RepID=D4N783_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:ACY24569.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 76h13.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_782_21
uncultured crenarchaeote 76h13, Crenarchaeota, Archaea

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18694..19341
DNA (648bp) protein (216aa)
Uncharacterized conserved protein Tax=uncultured crenarchaeote 76h13 RepID=D4N782_9CREN
Uncharacterized conserved protein {ECO:0000313|EMBL:ACY24568.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 76h13.;"
uncharacterized protein (ATP-grasp superfamily)
PLM3_30_b1_sep16_scaffold_782_22
uncultured crenarchaeote 76h13, Crenarchaeota, Archaea

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comp(19699..21081)
DNA (1383bp) protein (461aa)
Uncharacterized conserved protein Tax=uncultured crenarchaeote 76h13 RepID=D4N781_9CREN
Uncharacterized conserved protein {ECO:0000313|EMBL:ACY24567.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 76h13.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_782_23
uncultured crenarchaeote 76h13, Crenarchaeota, Archaea

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21208..21966
DNA (759bp) protein (253aa)
Uncharacterized conserved protein Tax=uncultured crenarchaeote 76h13 RepID=D4N778_9CREN
Uncharacterized conserved protein {ECO:0000313|EMBL:ACY24564.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 76h13.;"
PLM3_30_b1_sep16_scaffold_782_24
uncultured crenarchaeote 29d5, Crenarchaeota, Archaea

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22229..22489
DNA (261bp) protein (87aa)
Copper-containing nitrite reductase Tax=environmental samples RepID=D4N777_9CREN
Copper-containing nitrite reductase {ECO:0000313|EMBL:ACY24491.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 29d5.;"
nirK1; copper-containing nitrite reductase
Displaying 25 items

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