ggKbase home page

PLM3_30_b1_sep16_scaffold_10101

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_10101_1
unknown

Not on your lists

comp(3..179)
DNA (177bp) protein (59aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_10101_2
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(327..1316)
DNA (990bp) protein (330aa)
PiT family inorganic phosphate transporter Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HA56_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig173, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49498.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_10101_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1504..2145)
DNA (642bp) protein (214aa)
Putative Zn-dependent hydrolase Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IQ40_AZOC5
Putative enzyme with metallo-hydrolase/oxidoreductase domain (YcbL-like) {ECO:0000313|EMBL:KFC75558.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Zn-dependent hydrolase
PLM3_30_b1_sep16_scaffold_10101_4
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2176..3174)
DNA (999bp) protein (333aa)
carbohydrate kinase Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B6AEF
Fructokinase {ECO:0000313|EMBL:EJW10707.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
PfkB protein
PLM3_30_b1_sep16_scaffold_10101_5
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3321..4367
DNA (1047bp) protein (349aa)
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Tryptophan--tRNA ligase Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5E847_BRASB
PLM3_30_b1_sep16_scaffold_10101_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4931..5227)
DNA (297bp) protein (99aa)
hypothetical protein Tax=Afipia birgiae RepID=UPI000366E906
DNA polymerase subunit beta
DNA polymerase, beta domain protein region {ECO:0000313|EMBL:ABJ04360.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
PLM3_30_b1_sep16_scaffold_10101_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5352..5846
DNA (495bp) protein (165aa)
Putative stress protein UspA Tax=Rhodovulum sp. PH10 RepID=J6J0Z1_9RHOB
Putative stress protein UspA {ECO:0000313|EMBL:EJW10710.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_10101_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5937..6497
DNA (561bp) protein (187aa)
Nitrogen-fixing NifU-like Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J2L4_RHOP2
Propionyl-CoA synthetase {ECO:0000313|EMBL:KFC65451.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
nitrogen-fixing NifU-like
PLM3_30_b1_sep16_scaffold_10101_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6543..7574
DNA (1032bp) protein (344aa)
Peptidase M22 glycoprotease Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VG88_RHOPX
peptidase M22 glycoprotease
Peptidase M22 glycoprotease {ECO:0000313|EMBL:ADU41812.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
PLM3_30_b1_sep16_scaffold_10101_10
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7605..8042
DNA (438bp) protein (146aa)
Ferric uptake regulation protein FUR Tax=Rhodovulum sp. PH10 RepID=J5PHI8_9RHOB
Ferric uptake regulation protein FUR {ECO:0000313|EMBL:EJW10717.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
fur; ferric uptake regulation protein Fur
PLM3_30_b1_sep16_scaffold_10101_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8042..8779
DNA (738bp) protein (246aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=Rhodovulum sp. PH10 RepID=J6LBM7_9RHOB
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:EJW10718.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
phospholipid/glycerol acyltransferase
PLM3_30_b1_sep16_scaffold_10101_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8879..10318
DNA (1440bp) protein (480aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VG92_RHOPX
RNA modification protein, MiaB family
PLM3_30_b1_sep16_scaffold_10101_13
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10324..11364
DNA (1041bp) protein (347aa)
Phosphate starvation-inducible ATPase PhoH with RNA binding motif Tax=Rhodovulum sp. PH10 RepID=J6UCX3_9RHOB
Phosphate starvation-inducible ATPase PhoH with RNA binding motif {ECO:0000313|EMBL:EJW10719.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
phosphate starvation-inducible protein, PhoH-like protein
PLM3_30_b1_sep16_scaffold_10101_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11361..11867
DNA (507bp) protein (169aa)
Endoribonuclease YbeY {ECO:0000255|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00009};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Endoribonuclease YbeY Tax=Rhodopseudomonas palustris (strain BisB18) RepID=YBEY_RHOPB
hypothetical protein
PLM3_30_b1_sep16_scaffold_10101_15
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11873..13045
DNA (1173bp) protein (391aa)
Magnesium and cobalt efflux protein CorC Tax=Rhodovulum sp. PH10 RepID=J6UBV3_9RHOB
Magnesium and cobalt efflux protein CorC {ECO:0000313|EMBL:EJW10721.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
transporter
PLM3_30_b1_sep16_scaffold_10101_16
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13009..14490
DNA (1482bp) protein (494aa)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Apolipoprotein N-acyltransferase Tax=Afipia clevelandensis ATCC 49720 RepID=K8P424_9BRAD
lnt; apolipoprotein N-acyltransferase
PLM3_30_b1_sep16_scaffold_10101_17
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14651..15058
DNA (408bp) protein (136aa)
Putative transcriptional regulator Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IG10_AZOC5
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:BAF86011.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
PLM3_30_b1_sep16_scaffold_10101_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15333..15779
DNA (447bp) protein (149aa)
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQ09_NITWN
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 18 items

View Taxonomy