ggKbase home page

PLM3_30_b1_sep16_scaffold_10938

Search features with annotation key words

Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_10938_1
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1186
DNA (1185bp) protein (395aa)
amidase (EC:3.5.3.9)
Amidase, hydantoinase/carbamoylase family {ECO:0000313|EMBL:ADH89016.1}; EC=3.5.3.9 {ECO:0000313|EMBL:ADH89016.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
allantoate amidohydrolase Tax=Xanthobacteraceae RepID=UPI00036903B6
PLM3_30_b1_sep16_scaffold_10938_2
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1183..1698)
DNA (516bp) protein (172aa)
Putative uncharacterized protein Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HZF0_RHOVT
Uncharacterized protein {ECO:0000313|EMBL:KFG69228.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_10938_3
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1698..3008)
DNA (1311bp) protein (437aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Ribosomal protein S12 methylthiotransferase RimO Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAL5_STAND
MiaB-like tRNA modifying protein YliG
PLM3_30_b1_sep16_scaffold_10938_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3008..4405)
DNA (1398bp) protein (466aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI0002F657E7
Putative metallo-dependent peptidase {ECO:0000313|EMBL:KFC67083.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_10938_5
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4533..5474
DNA (942bp) protein (314aa)
Uncharacterized protein {ECO:0000313|EMBL:KHK51615.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
PLM3_30_b1_sep16_scaffold_10938_6
Enterobacter lignolyticus, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5513..5806)
DNA (294bp) protein (98aa)
Transcriptional regulator, AraC family Tax=Enterobacter lignolyticus (strain SCF1) RepID=E3GBD0_ENTLS
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADO48893.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter lignolyticus (strain SCF1).;"
Displaying 6 items

View Taxonomy