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PLM3_30_b1_sep16_Alphaproteobacteria_Rhizobiales_66_8

PLM3_30cm_b1_sep2016_Rhizobiales_66_8
In projects: PLM3_30cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 301-350 of 743 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_30_b1_sep16_scaffold_16178
Class: Alphaproteobacteria (50%)
8 6663 bp 67.94 7.88 96.04
PLM3_30_b1_sep16_scaffold_7945
Species: R_Betaproteobacteria_68_150 (50%)
4 5324 bp 67.49 7.89 91.00
PLM3_30_b1_sep16_scaffold_22336
Class: Alphaproteobacteria (80%)
5 4640 bp 65.58 7.89 91.42
PLM3_30_b1_sep16_scaffold_5290
Order: Rhizobiales (60%)
10 6557 bp 65.04 7.89 87.34
PLM3_30_b1_sep16_scaffold_2382
Order: Rhizobiales (54.55%)
11 9549 bp 67.20 7.90 85.55
PLM3_30_b1_sep16_scaffold_22186
Order: Rhizobiales (60%)
5 3034 bp 65.66 7.91 92.55
PLM3_30_b1_sep16_scaffold_5818
Order: Rhizobiales (55.56%)
9 6240 bp 64.68 7.91 83.56
PLM3_30_b1_sep16_scaffold_12540
Order: Rhizobiales (66.67%)
6 4173 bp 64.22 7.91 85.19
PLM3_30_b1_sep16_scaffold_10424
Genus: Azospirillum (60%)
5 4610 bp 65.18 7.91 90.59
PLM3_30_b1_sep16_scaffold_12684
Order: Rhizobiales (50%)
6 4151 bp 66.06 7.91 80.66
PLM3_30_b1_sep16_scaffold_5020
Order: Rhizobiales (57.14%)
7 6714 bp 65.50 7.91 87.76
PLM3_30_b1_sep16_scaffold_15920
Species: Rhodopseudomonas palustris (50%)
4 3653 bp 66.30 7.92 94.69
PLM3_30_b1_sep16_scaffold_12695
Order: Rhizobiales (50%)
6 4148 bp 63.62 7.92 83.53
PLM3_30_b1_sep16_scaffold_64722
Class: Alphaproteobacteria (100%)
3 3070 bp 67.65 7.92 98.99
PLM3_30_b1_sep16_scaffold_12233
Class: Alphaproteobacteria (83.33%)
12 8641 bp 65.15 7.92 82.94
PLM3_30_b1_sep16_scaffold_30700
Species: RBG_16_Betaproteobacteria_66_20_curated (100%)
3 2536 bp 64.00 7.93 86.59
PLM3_30_b1_sep16_scaffold_21966
Order: Rhizobiales (50%)
8 7854 bp 64.50 7.94 90.76
PLM3_30_b1_sep16_scaffold_13614
Phylum: Proteobacteria (57.14%)
7 3988 bp 63.19 7.94 76.35
PLM3_30_b1_sep16_scaffold_32198
Order: Burkholderiales (80%)
5 5158 bp 66.40 7.94 88.00
PLM3_30_b1_sep16_scaffold_2815
Species: alpha proteobacterium BAL199 (55.56%)
9 9522 bp 65.10 7.94 95.05
PLM3_30_b1_sep16_scaffold_6525
Order: Rhizobiales (62.5%)
8 5891 bp 64.27 7.94 89.37
PLM3_30_b1_sep16_scaffold_64078
Order: Rhizobiales (50%)
4 3735 bp 68.22 7.95 92.29
PLM3_30_b1_sep16_scaffold_31268
Genus: Bradyrhizobium (100%)
3 3055 bp 67.86 7.95 95.45
PLM3_30_b1_sep16_scaffold_6109
Class: Alphaproteobacteria (50%)
8 6993 bp 66.41 7.96 93.65
PLM3_30_b1_sep16_scaffold_5542
Phylum: Proteobacteria (57.14%)
7 6392 bp 66.40 7.96 95.93
PLM3_30_b1_sep16_scaffold_22989
Order: Rhizobiales (50%)
4 2974 bp 65.53 7.97 90.18
PLM3_30_b1_sep16_scaffold_8006
Phylum: Proteobacteria (66.67%)
12 9294 bp 65.90 7.97 91.83
PLM3_30_b1_sep16_scaffold_42479
Species: Rhodopseudomonas palustris (50%)
4 4044 bp 65.88 7.97 80.93
PLM3_30_b1_sep16_scaffold_26654
Order: Rhizobiales (80%)
5 3985 bp 65.14 7.98 93.27
PLM3_30_b1_sep16_scaffold_5345
Order: Rhizobiales (80%)
10 9797 bp 66.00 7.98 92.81
PLM3_30_b1_sep16_scaffold_4298
Species: R_NC10_66_22 (71.43%)
7 7236 bp 65.30 7.98 98.42
PLM3_30_b1_sep16_scaffold_14412
Order: Rhizobiales (50%)
4 4679 bp 63.50 7.98 86.69
PLM3_30_b1_sep16_scaffold_59205
Order: Rhizobiales (87.5%)
8 3830 bp 66.55 7.99 95.33
PLM3_30_b1_sep16_scaffold_3870
Class: Alphaproteobacteria (62.5%)
8 7589 bp 64.53 7.99 86.26
PLM3_30_b1_sep16_scaffold_4859
Order: Rhizobiales (61.54%)
13 13299 bp 66.66 7.99 86.67
PLM3_30_b1_sep16_scaffold_2933
Order: Rhizobiales (50%)
20 19329 bp 66.38 7.99 82.24
PLM3_30_b1_sep16_scaffold_14249
Species: bacterium YEK0313 (60%)
5 3888 bp 65.84 7.99 99.31
PLM3_30_b1_sep16_scaffold_32044
Species: bacterium YEK0313 (50%)
4 3359 bp 62.70 7.99 98.42
PLM3_30_b1_sep16_scaffold_28780
Species: Rhodovulum sp. PH10 (66.67%)
3 2629 bp 60.78 7.99 88.78
PLM3_30_b1_sep16_scaffold_18911
Order: Rhizobiales (50%)
4 3317 bp 66.23 8.00 95.33
PLM3_30_b1_sep16_scaffold_11235
Order: Rhizobiales (57.14%)
7 4427 bp 67.40 8.00 87.89
PLM3_30_b1_sep16_scaffold_1970
Genus: Afipia (50%)
10 11493 bp 66.14 8.00 93.32
PLM3_30_b1_sep16_scaffold_16626
Class: Alphaproteobacteria (80%)
5 3895 bp 66.68 8.01 87.96
PLM3_30_b1_sep16_scaffold_10033
Order: Rhizobiales (66.67%)
12 11013 bp 65.75 8.02 90.08
PLM3_30_b1_sep16_scaffold_4865
Class: Alphaproteobacteria (83.33%)
12 11220 bp 67.70 8.02 87.54
PLM3_30_b1_sep16_scaffold_6208
Order: Rhizobiales (50%)
6 6038 bp 67.04 8.02 97.23
PLM3_30_b1_sep16_scaffold_1397
Order: Rhizobiales (100%)
10 12112 bp 65.42 8.03 92.78
PLM3_30_b1_sep16_scaffold_7519
Order: Rhizobiales (80%)
5 6839 bp 64.40 8.03 81.81
PLM3_30_b1_sep16_scaffold_17140
Genus: Bradyrhizobium (50%)
4 3506 bp 65.17 8.04 92.24
PLM3_30_b1_sep16_scaffold_840
Order: Rhizobiales (66.67%)
18 15032 bp 62.24 8.04 89.33
Displaying items 301-350 of 743 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.