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PLM3_30_b1_sep16_Alphaproteobacteria_Rhizobiales_66_8

PLM3_30cm_b1_sep2016_Rhizobiales_66_8
In projects: PLM3_30cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 251-300 of 743 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_30_b1_sep16_scaffold_20241
Phylum: Proteobacteria (66.67%)
3 3929 bp 65.31 7.71 87.50
PLM3_30_b1_sep16_scaffold_54816
Species: Bosea sp. LC85 (75%)
4 2725 bp 63.49 7.71 92.59
PLM3_30_b1_sep16_scaffold_11985
Order: Rhizobiales (80%)
5 5964 bp 66.21 7.72 90.85
PLM3_30_b1_sep16_scaffold_4050
Order: Rhizobiales (50%)
10 7427 bp 65.83 7.72 90.64
PLM3_30_b1_sep16_scaffold_17384
Species: Beijerinckia indica (50%)
2 3476 bp 66.92 7.72 87.26
PLM3_30_b1_sep16_scaffold_799
Order: Rhizobiales (68.75%)
16 15363 bp 65.84 7.72 92.52
PLM3_30_b1_sep16_scaffold_37679
Species: Rhodovulum sp. PH10 (100%)
4 3414 bp 66.73 7.73 90.33
PLM3_30_b1_sep16_scaffold_2734
Species: Bosea sp. LC85 (72.73%)
11 8981 bp 66.21 7.73 97.84
PLM3_30_b1_sep16_scaffold_7424
Order: Rhizobiales (66.67%)
6 8146 bp 67.32 7.73 91.48
PLM3_30_b1_sep16_scaffold_13591
Order: Rhizobiales (75%)
8 5350 bp 65.87 7.74 79.51
PLM3_30_b1_sep16_scaffold_8414
Phylum: Proteobacteria (50%)
10 5170 bp 67.10 7.75 87.45
PLM3_30_b1_sep16_scaffold_32402
Species: Rhodovulum sp. PH10 (66.67%)
3 3620 bp 65.91 7.75 98.37
PLM3_30_b1_sep16_scaffold_13903
Genus: Bradyrhizobium (50%)
6 6735 bp 66.30 7.75 90.87
PLM3_30_b1_sep16_scaffold_48388
Species: Aurantimonas manganoxydans (75%)
4 2671 bp 65.07 7.75 81.88
PLM3_30_b1_sep16_scaffold_6555
Genus: Bradyrhizobium (66.67%)
6 5877 bp 65.71 7.76 92.09
PLM3_30_b1_sep16_scaffold_13091
Order: Rhizobiales (100%)
5 4078 bp 66.33 7.76 92.10
PLM3_30_b1_sep16_scaffold_8883
Class: Alphaproteobacteria (100%)
7 5035 bp 65.00 7.78 88.00
PLM3_30_b1_sep16_scaffold_4554
Phylum: Proteobacteria (80%)
15 15404 bp 64.53 7.78 86.82
PLM3_30_b1_sep16_scaffold_8946
Order: Rhizobiales (57.14%)
7 5010 bp 67.13 7.78 89.46
PLM3_30_b1_sep16_scaffold_8393
Class: Betaproteobacteria (55.56%)
9 10134 bp 66.93 7.79 98.99
PLM3_30_b1_sep16_scaffold_21821
Order: Rhizobiales (66.67%)
3 3062 bp 68.06 7.79 88.77
PLM3_30_b1_sep16_scaffold_5527
Order: Rhizobiales (50%)
12 10943 bp 66.43 7.79 89.62
PLM3_30_b1_sep16_scaffold_7737
Order: Rhizobiales (75%)
8 7447 bp 67.37 7.80 87.98
PLM3_30_b1_sep16_scaffold_36791
Order: Rhizobiales (60%)
5 3251 bp 68.19 7.80 95.60
PLM3_30_b1_sep16_scaffold_5440
Order: Rhizobiales (66.67%)
18 14278 bp 66.58 7.80 90.16
PLM3_30_b1_sep16_scaffold_12690
Order: Rhizobiales (66.67%)
6 6516 bp 67.27 7.80 89.87
PLM3_30_b1_sep16_scaffold_3838
Order: Rhizobiales (60%)
10 7622 bp 64.71 7.81 87.46
PLM3_30_b1_sep16_scaffold_30030
Class: Alphaproteobacteria (60%)
5 4089 bp 66.18 7.81 95.60
PLM3_30_b1_sep16_scaffold_6138
Species: alpha proteobacterium BAL199 (50%)
4 6070 bp 66.67 7.81 96.57
PLM3_30_b1_sep16_scaffold_11924
Order: Rhizobiales (62.5%)
8 7184 bp 64.95 7.81 84.40
PLM3_30_b1_sep16_scaffold_24228
Order: Rhizobiales (80%)
5 4372 bp 65.69 7.82 93.18
PLM3_30_b1_sep16_scaffold_22385
Order: Rhizobiales (55.56%)
9 6428 bp 64.36 7.82 84.57
PLM3_30_b1_sep16_scaffold_19090
Class: Alphaproteobacteria (55.56%)
9 6169 bp 64.56 7.83 90.50
PLM3_30_b1_sep16_scaffold_5164
Class: Alphaproteobacteria (55.56%)
9 6627 bp 63.42 7.83 81.98
PLM3_30_b1_sep16_scaffold_13386
Order: Rhodospirillales (50%)
4 4023 bp 64.45 7.83 90.83
PLM3_30_b1_sep16_scaffold_11099
Order: Rhizobiales (85.71%)
7 5285 bp 63.69 7.83 82.99
PLM3_30_b1_sep16_scaffold_2506
Order: Rhizobiales (63.64%)
11 9343 bp 66.62 7.83 90.90
PLM3_30_b1_sep16_scaffold_6860
Species: Afipia sp. P52-10 (57.14%)
7 5738 bp 67.17 7.84 98.24
PLM3_30_b1_sep16_scaffold_4180
Phylum: Proteobacteria (62.5%)
8 7328 bp 64.19 7.84 98.66
PLM3_30_b1_sep16_scaffold_37851
Species: R_NC10_66_22 (57.14%)
7 5242 bp 64.65 7.84 73.66
PLM3_30_b1_sep16_scaffold_29269
Species: Rhodovulum sp. PH10 (50%)
6 4667 bp 64.45 7.84 95.97
PLM3_30_b1_sep16_scaffold_67944
Order: Rhizobiales (50%)
4 2502 bp 64.23 7.85 85.61
PLM3_30_b1_sep16_scaffold_30568
Class: Betaproteobacteria (66.67%)
3 2542 bp 67.62 7.85 95.95
PLM3_30_b1_sep16_scaffold_15512
Species: Bradyrhizobium oligotrophicum (50%)
2 3707 bp 66.20 7.85 90.15
PLM3_30_b1_sep16_scaffold_6955
Class: Alphaproteobacteria (66.67%)
15 12174 bp 65.94 7.86 84.75
PLM3_30_b1_sep16_scaffold_12758
Order: Rhizobiales (75%)
8 6563 bp 67.30 7.86 99.38
PLM3_30_b1_sep16_scaffold_18470
Order: Rhizobiales (75%)
8 6344 bp 64.23 7.87 89.61
PLM3_30_b1_sep16_scaffold_8238
Class: Alphaproteobacteria (55.56%)
9 6519 bp 63.51 7.87 84.72
PLM3_30_b1_sep16_scaffold_35325
Genus: Rhodovulum (50%)
6 4763 bp 67.60 7.87 90.57
PLM3_30_b1_sep16_scaffold_18826
Phylum: Proteobacteria (77.78%)
9 6492 bp 65.82 7.88 96.35
Displaying items 251-300 of 743 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.