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PLM3_30_b1_sep16_scaffold_1682

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_1682_trna_5
unknown

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comp(2..72)
DNA (71bp)
transferRNA Trp
PLM3_30_b1_sep16_scaffold_1682_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(186..1373)
DNA (1188bp) protein (396aa)
Elongation factor Tu Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7E7_NIAKG
translation elongation factor 1A (EF-1A/EF-Tu)
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1682_trna_4
unknown

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comp(1533..1604)
DNA (72bp)
transferRNA Thr
PLM3_30_b1_sep16_scaffold_1682_trna_3
unknown

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comp(1737..1809)
DNA (73bp)
transferRNA Gly
PLM3_30_b1_sep16_scaffold_1682_trna_2
unknown

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comp(1918..2000)
DNA (83bp)
transferRNA Tyr
PLM3_30_b1_sep16_scaffold_1682_trna_1
unknown

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comp(2098..2170)
DNA (73bp)
transferRNA Thr
PLM3_30_b1_sep16_scaffold_1682_2
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2427..2726)
DNA (300bp) protein (100aa)
Sigma-54 modulation protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7E8_NIAKG
Putative sigma-54 modulation protein {ECO:0000313|EMBL:GAO41189.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
sigma-54 modulation protein
PLM3_30_b1_sep16_scaffold_1682_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2901..3791)
DNA (891bp) protein (297aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000364BF1F
Tyrosine recombinase xerC
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3_30_b1_sep16_scaffold_1682_4
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3885..4082)
DNA (198bp) protein (66aa)
30S ribosomal protein S21 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUF3_CHIPD
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
30S ribosomal protein S21
PLM3_30_b1_sep16_scaffold_1682_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4186..4761
DNA (576bp) protein (192aa)
Riboflavin synthase alpha chain {ECO:0000313|EMBL:AEW01187.1}; EC=2.5.1.9 {ECO:0000313|EMBL:AEW01187.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
riboflavin synthase subunit alpha Tax=Segetibacter koreensis RepID=UPI00037F1178
riboflavin synthase subunit alpha
PLM3_30_b1_sep16_scaffold_1682_6
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4766..5722
DNA (957bp) protein (319aa)
Glycosyl transferase family protein Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QKD7_SPILD
glycosyl transferase family protein
Glycosyl transferase family protein {ECO:0000313|EMBL:ADB38963.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
PLM3_30_b1_sep16_scaffold_1682_7
Hyphomonas oceanitis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5715..6431
DNA (717bp) protein (239aa)
type 12 methyltransferase Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B4F959
Type 12 methyltransferase {ECO:0000313|EMBL:KDA00335.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas oceanitis SCH89.;"
type 12 methyltransferase
PLM3_30_b1_sep16_scaffold_1682_8
CG_Bacteroid_02, Bacteroidetes, Bacteria

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6470..8587
DNA (2118bp) protein (706aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00036501D5
hypothetical protein
Tax=CG_Bacteroid_02
PLM3_30_b1_sep16_scaffold_1682_9
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8574..10154
DNA (1581bp) protein (527aa)
Tax=RBG_13_Planctomycetes_63_9_curated
PLM3_30_b1_sep16_scaffold_1682_10
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10159..11403)
DNA (1245bp) protein (415aa)
Uncharacterized protein Tax=Smithella sp. ME-1 RepID=V4F8X4_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ESP62795.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. ME-1.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_1682_11
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11488..11844)
DNA (357bp) protein (119aa)
membrane protein
Putative uncharacterized protein bin=GWC2_Bacteroidetes_40_22 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
Membrane protein {ECO:0000313|EMBL:AKD53952.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
PLM3_30_b1_sep16_scaffold_1682_12
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11853..12002)
DNA (150bp) protein (50aa)
Uncharacterized protein Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QKS0_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB40236.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
PLM3_30_b1_sep16_scaffold_1682_13
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12082..13947)
DNA (1866bp) protein (622aa)
Carbamoyltransferase Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W4C6_DYAFD
carbamoyltransferase
Carbamoyltransferase {ECO:0000313|EMBL:ACT94027.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
PLM3_30_b1_sep16_scaffold_1682_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14056..15783)
DNA (1728bp) protein (576aa)
Fe-S protein assembly chaperone HscA Tax=Pontibacter sp. BAB1700 RepID=J0LGJ7_9BACT
Heat shock protein Hsp70 {ECO:0000313|EMBL:KIC95633.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
molecular chaperone
PLM3_30_b1_sep16_scaffold_1682_15
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15776..16603)
DNA (828bp) protein (276aa)
Methyltransferase type 11 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KXI8_HALH1
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:AEE50359.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
PLM3_30_b1_sep16_scaffold_1682_16
unknown

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comp(16690..16893)
DNA (204bp) protein (68aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_1682_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16890..19298)
DNA (2409bp) protein (803aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7F7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01193.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying 22 items

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