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PLM3_30_b2_sep16_scaffold_16209

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_16209_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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540..1208
DNA (669bp) protein (223aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Thiazole synthase Tax=Chthoniobacter flavus Ellin428 RepID=B4CVG8_9BACT
thiG; thiazole synthase
PLM3_30_b2_sep16_scaffold_16209_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(1247..1843)
DNA (597bp) protein (199aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase Tax=Chthoniobacter flavus Ellin428 RepID=B4DC77_9BACT
PLM3_30_b2_sep16_scaffold_16209_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(1840..2247)
DNA (408bp) protein (136aa)
Biopolymer transport protein ExbD/TolR Tax=Chthoniobacter flavus Ellin428 RepID=B4DC78_9BACT
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EDY15955.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
exbD; biopolymer transport protein ExbD/TolR
PLM3_30_b2_sep16_scaffold_16209_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2270..2908)
DNA (639bp) protein (213aa)
MotA/TolQ/ExbB proton channel Tax=Chthoniobacter flavus Ellin428 RepID=B4DC79_9BACT
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EDY15956.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
tolQ; MotA/TolQ/ExbB proton channel family protein
PLM3_30_b2_sep16_scaffold_16209_5
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(2874..3848)
DNA (975bp) protein (325aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4DC80_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM3_30_b2_sep16_scaffold_16209_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(3916..4854)
DNA (939bp) protein (313aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
8-oxoguanine DNA glycosylase domain protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D964_9BACT
8-oxoguanine DNA glycosylase domain protein {ECO:0000313|EMBL:EDY16967.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM3_30_b2_sep16_scaffold_16209_7
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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4979..6493
DNA (1515bp) protein (505aa)
SSS sodium solute transporter superfamily Tax=Akkermansia sp. CAG:344 RepID=R7DUY6_9BACT
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:CDD93956.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia sp. CAG:344.;"
SSS sodium solute transporter superfamily protein
PLM3_30_b2_sep16_scaffold_16209_8
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

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6586..6906
DNA (321bp) protein (107aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein Tax=Rhodothermus marinus RepID=D0MG33_RHOM4
4Fe-4S ferredoxin
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM3_30_b2_sep16_scaffold_16209_9
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(6946..7758)
DNA (813bp) protein (271aa)
aspartyl-tRNA synthase Tax=Verrucomicrobium spinosum RepID=UPI00017468E8
Suspect SCG annotation. See neighboring gene [PLM3_30_b2_sep16_scaffold_16209_10].
aspartyl-tRNA synthetase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM3_30_b2_sep16_scaffold_16209_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(7755..8711)
DNA (957bp) protein (319aa)
Aspartate--tRNA ligase Tax=Chthoniobacter flavus Ellin428 RepID=B4CWE9_9BACT
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EDY21741.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
aspartyl-tRNA synthetase
PLM3_30_b2_sep16_scaffold_16209_11
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(8798..10000)
DNA (1203bp) protein (401aa)
Histidyl-tRNA synthetase Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3DX00_METI4
hisS; Histidyl-tRNA synthetase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM3_30_b2_sep16_scaffold_16209_12
unknown

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10041..10472
DNA (432bp) protein (144aa)
hypothetical protein Tax=Verrucomicrobium spinosum RepID=UPI000174566A
PLM3_30_b2_sep16_scaffold_16209_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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10617..12236
DNA (1620bp) protein (540aa)
Excinuclease ABC C subunit domain protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CU00_9BACT
UvrABC system protein C {ECO:0000256|SAAS:SAAS00125834}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
excinuclease ABC subunit C
PLM3_30_b2_sep16_scaffold_16209_14
unknown

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comp(12174..12311)
DNA (138bp) protein (46aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_16209_15
unknown

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12363..12464
DNA (102bp) protein (34aa)

This feature has no annotations

Displaying 15 items

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