ggKbase home page

PLM3_30_b2_sep16_scaffold_1737

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_1737_1
Alteromonas australica, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127..816)
DNA (690bp) protein (230aa)
Uncharacterized protein Tax=Holophaga foetida DSM 6591 RepID=H1NY80_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF99657.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas australica.;"
PLM3_30_b2_sep16_scaffold_1737_2
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

922..1533
DNA (612bp) protein (204aa)
Uncharacterized protein Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4REG4_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG76906.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
PLM3_30_b2_sep16_scaffold_1737_3
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(1537..2274)
DNA (738bp) protein (246aa)
Genome sequencing data, contig C323 Tax=Microcystis aeruginosa PCC 9808 RepID=I4HVZ9_MICAE
Uncharacterized protein {ECO:0000313|EMBL:GAL93403.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis aeruginosa NIES-44.;"
PLM3_30_b2_sep16_scaffold_1737_4
Sulfitobacter sp. NAS-14.1, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2258..2902)
DNA (645bp) protein (215aa)
hypothetical protein Tax=Cytophaga aurantiaca RepID=UPI00036DAC80
Uncharacterized protein {ECO:0000313|EMBL:EAP81783.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter sp. NAS-14.1.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_1737_trna_1
unknown

Not on your lists

comp(2942..3014)
DNA (73bp)
transferRNA Lys
PLM3_30_b2_sep16_scaffold_1737_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(3111..3776)
DNA (666bp) protein (222aa)
REG-2-like, HAD superfamily (Subfamily IA) hydrolase Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ0_9BACT
REG-2-like, HAD superfamily (Subfamily IA) hydrolase {ECO:0000313|EMBL:EDY20591.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
haloacid dehalogenase
PLM3_30_b2_sep16_scaffold_1737_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3889..5019
DNA (1131bp) protein (377aa)
Transcriptional regulator, Lrp/AsnC family Tax=Pedosphaera parvula Ellin514 RepID=B9XE91_9BACT
Transcriptional regulator, Lrp/AsnC family {ECO:0000313|EMBL:EEF61982.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
lrp; AsnC family transcriptional regulator
PLM3_30_b2_sep16_scaffold_1737_7
unknown

Not on your lists

comp(5347..5646)
DNA (300bp) protein (100aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_1737_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(5655..6503)
DNA (849bp) protein (283aa)
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:EDY17481.1}; EC=2.4.2.19 {ECO:0000313|EMBL:EDY17481.1};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase Tax=Chthoniobacter flavus Ellin428 RepID=B4D7V8_9BACT
PLM3_30_b2_sep16_scaffold_1737_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(6880..7791)
DNA (912bp) protein (304aa)
5'-3' exonuclease Tax=Chthoniobacter flavus Ellin428 RepID=B4D756_9BACT
5'-3' exonuclease {ECO:0000313|EMBL:EDY17707.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
exo; 5'-3' exonuclease
PLM3_30_b2_sep16_scaffold_1737_10
unknown

Not on your lists

7821..8963
DNA (1143bp) protein (381aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_1737_11
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9000..9671)
DNA (672bp) protein (224aa)
Uncharacterized protein {ECO:0000313|EMBL:KGQ18243.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
PLM3_30_b2_sep16_scaffold_1737_12
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


9807..10844
DNA (1038bp) protein (346aa)
recA protein (EC:3.6.3.8)
Protein RecA Tax=Chthoniobacter flavus Ellin428 RepID=B4CV92_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM3_30_b2_sep16_scaffold_1737_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


10978..12777
DNA (1800bp) protein (600aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
alanyl-tRNA synthetase (EC:6.1.1.7)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00035E6FC3
PLM3_30_b2_sep16_scaffold_1737_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12845..13708
DNA (864bp) protein (288aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Alanine--tRNA ligase Tax=Pedosphaera parvula Ellin514 RepID=B9XID2_9BACT
Suspect SCG annotation. See neighboring gene [PLM3_30_b2_sep16_scaffold_1737_13].
alanyl-tRNA synthetase
PLM3_30_b2_sep16_scaffold_1737_15
Legionella fallonii, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13717..14346)
DNA (630bp) protein (210aa)
Periplasmic component of the Tol biopolymer transport system-like protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D2L5_9BACT
TolB-like protein
TolB-like protein {ECO:0000313|EMBL:CEG56909.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella fallonii LLAP-10.;"
Displaying 16 items

View Taxonomy