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PLM3_30_b2_sep16_scaffold_1923

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_1923_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(72..1142)
DNA (1071bp) protein (357aa)
Alanine--glyoxylate transaminase {ECO:0000313|EMBL:EDY22201.1}; EC=2.6.1.44 {ECO:0000313|EMBL:EDY22201.1};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
alanine--glyoxylate transaminase (EC:2.6.1.44)
Alanine--glyoxylate transaminase Tax=Chthoniobacter flavus Ellin428 RepID=B4CUG3_9BACT
PLM3_30_b2_sep16_scaffold_1923_2
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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1251..2273
DNA (1023bp) protein (341aa)
40-residue YVTN family beta-propeller repeat protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B2A074_OPITP
hypothetical protein
40-residue YVTN family beta-propeller repeat protein {ECO:0000313|EMBL:ACB77410.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM3_30_b2_sep16_scaffold_1923_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2332..4809)
DNA (2478bp) protein (826aa)
Tetratricopeptide TPR_2 repeat protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CU03_9BACT
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EDY22041.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_1923_4
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(4806..5213)
DNA (408bp) protein (136aa)
biopolymer transportern ExbD Tax=Verrucomicrobium sp. 3C RepID=UPI000379229D
exbD; biopolymer transport protein ExbD/TolR
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:ACD82879.1}; species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
PLM3_30_b2_sep16_scaffold_1923_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(5229..5999)
DNA (771bp) protein (257aa)
MotA/TolQ/ExbB proton channel Tax=Chthoniobacter flavus Ellin428 RepID=B4CU01_9BACT
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EDY22039.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
MotA/TolQ/ExbB proton channel
PLM3_30_b2_sep16_scaffold_1923_6
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6171..8081)
DNA (1911bp) protein (637aa)
alpha amylase, catalytic region Tax=Verrucomicrobium spinosum RepID=UPI00017466CA
putative glycanase or glycogenase with amylase domain
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM3_30_b2_sep16_scaffold_1923_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(8265..8906)
DNA (642bp) protein (214aa)
Putative transcriptional regulator Tax=Chthoniobacter flavus Ellin428 RepID=B4D697_9BACT
Putative transcriptional regulator {ECO:0000313|EMBL:EDY18006.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ArsR family transcriptional regulator
PLM3_30_b2_sep16_scaffold_1923_8
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9054..10136)
DNA (1083bp) protein (361aa)
hypothetical protein Tax=Porphyrobacter sp. AAP82 RepID=UPI0003805008
Peptidase M23 family protein {ECO:0000313|EMBL:KIE46875.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
peptidase M23
PLM3_30_b2_sep16_scaffold_1923_9
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(10525..11724)
DNA (1200bp) protein (400aa)
lysine 2,3-aminomutase YodO family protein (EC:5.4.3.2)
lysine 2,3-aminomutase Tax=Verrucomicrobium spinosum RepID=UPI00017468CA
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM3_30_b2_sep16_scaffold_1923_10

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comp(11886..12272)
DNA (387bp) protein (129aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=E6Q871_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI03397.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PLM3_30_b2_sep16_scaffold_1923_11
unknown

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comp(12300..12569)
DNA (270bp) protein (90aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_1923_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(12773..14005)
DNA (1233bp) protein (411aa)
Propanoyl-CoA C-acyltransferase {ECO:0000313|EMBL:EDY15895.1}; EC=2.3.1.176 {ECO:0000313|EMBL:EDY15895.1};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Propanoyl-CoA C-acyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4DCE6_9BACT
acetyl-CoA acetyltransferase
PLM3_30_b2_sep16_scaffold_1923_13
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

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comp(14176..15159)
DNA (984bp) protein (328aa)
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin3_NC10 organism_group=NC10
bcd; acyl-CoA dehydrogenase, short-chain specific
Tax=RBG_16_Planctomycetes_59_8_curated
PLM3_30_b2_sep16_scaffold_1923_14
Synechococcus sp. PCC 7502, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(15241..15636)
DNA (396bp) protein (132aa)
Rhodanese-related sulfurtransferase Tax=Synechococcus sp. PCC 7502 RepID=K9SWH4_9SYNE
rhodanese-related sulfurtransferase
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:AFY74525.1}; Flags: Precursor;; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. PCC 7502.;"
PLM3_30_b2_sep16_scaffold_1923_15
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(15770..16987)
DNA (1218bp) protein (406aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D7Y3_9BACT
hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM3_30_b2_sep16_scaffold_1923_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(17011..17610)
DNA (600bp) protein (200aa)
ABC transporter-related protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D7Y2_9BACT
ABC transporter-related protein {ECO:0000313|EMBL:EDY17505.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
macrolide ABC transporter ATP-binding protein
Displaying 16 items

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