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PLM3_30_b2_sep16_scaffold_2733

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_2733_1

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2..736
DNA (735bp) protein (245aa)
pip; proline iminopeptidase (EC:3.4.11.5)
Proline iminopeptidase Tax=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) RepID=PIP_BREBN
Marine sediment metagenome DNA, contig: S06H3_S02372 {ECO:0000313|EMBL:GAI31646.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_30_b2_sep16_scaffold_2733_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(842..1654)
DNA (813bp) protein (271aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4CZF6_9BACT
lpxA; acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase
PLM3_30_b2_sep16_scaffold_2733_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(1697..2428)
DNA (732bp) protein (244aa)
DNA repair protein RadC Tax=Chthoniobacter flavus Ellin428 RepID=B4CZF8_9BACT
DNA repair protein RadC {ECO:0000313|EMBL:EDY20122.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
radC; DNA repair protein RadC
PLM3_30_b2_sep16_scaffold_2733_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2467..3606)
DNA (1140bp) protein (380aa)
Polyprenyl synthetase Tax=Chthoniobacter flavus Ellin428 RepID=B4CZH2_9BACT
Polyprenyl synthetase {ECO:0000313|EMBL:EDY20136.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
polyprenyl synthetase
PLM3_30_b2_sep16_scaffold_2733_5
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

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comp(3623..4267)
DNA (645bp) protein (215aa)
hypothetical protein Tax=Verrucomicrobium sp. 3C RepID=UPI00036526C0
lplA; lipoate-protein ligase A
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PLM3_30_b2_sep16_scaffold_2733_6
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

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comp(4264..4956)
DNA (693bp) protein (231aa)
Orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
orotidine 5''''-phosphate decarboxylase bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Tax=RBG_13_Aminicenantes_62_12_curated
PLM3_30_b2_sep16_scaffold_2733_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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4979..5869
DNA (891bp) protein (297aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Y4_9BACT
PLM3_30_b2_sep16_scaffold_2733_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(5871..7379)
DNA (1509bp) protein (503aa)
UvrABC system protein B Tax=Chthoniobacter flavus Ellin428 RepID=B4D1F3_9BACT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
excinuclease ABC subunit B
PLM3_30_b2_sep16_scaffold_2733_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(7376..8101)
DNA (726bp) protein (242aa)
UvrABC system protein B Tax=Chthoniobacter flavus Ellin428 RepID=B4D1F3_9BACT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
excinuclease ABC subunit B
PLM3_30_b2_sep16_scaffold_2733_10
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(8159..9334)
DNA (1176bp) protein (392aa)
Putative dipeptidase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A990_GEMAT
putative dipeptidase
Putative dipeptidase {ECO:0000313|EMBL:BAH39067.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM3_30_b2_sep16_scaffold_2733_11

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9448..11844
DNA (2397bp) protein (799aa)
Tetratricopeptide TPR_2 repeat protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NM4_SOLUE
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49190.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_2733_12
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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11936..13384
DNA (1449bp) protein (483aa)
Tetratricopeptide repeat domain protein Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JPL6_9BACT
Tetratricopeptide repeat domain protein {ECO:0000313|EMBL:EDY81966.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_2733_13
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

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comp(13593..14465)
DNA (873bp) protein (291aa)
Peptidase M50 bin=GWF2_Lentisphaerae_49_21 species=Clostridium beijerinckii genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Zn-dependent protease
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PLM3_30_b2_sep16_scaffold_2733_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(14535..16118)
DNA (1584bp) protein (528aa)
Carbohydrate kinase, YjeF related protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D456_9BACT
Carbohydrate kinase, YjeF related protein {ECO:0000313|EMBL:EDY18657.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
carbohydrate kinase
PLM3_30_b2_sep16_scaffold_2733_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(16119..16955)
DNA (837bp) protein (279aa)
Cell wall hydrolase/autolysin Tax=Chthoniobacter flavus Ellin428 RepID=B4D457_9BACT
Cell wall hydrolase/autolysin {ECO:0000313|EMBL:EDY18658.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_2733_16
unknown

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comp(16958..17266)
DNA (309bp) protein (103aa)

This feature has no annotations

Displaying 16 items

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