ggKbase home page

PLM3_30_b2_sep16_scaffold_540

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_540_1
Candidatus Jettenia caeni, Candidatus Jettenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

3..878
DNA (876bp) protein (292aa)
Citrate transporter protein Tax=planctomycete KSU-1 RepID=I3IIV0_9PLAN
Citrate transporter protein {ECO:0000313|EMBL:GAB61645.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae.;" source="planctomycete KSU-1.;"
citrate transporter
PLM3_30_b2_sep16_scaffold_540_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(826..1854)
DNA (1029bp) protein (343aa)
HhH-GPD family protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D777_9BACT
HhH-GPD family protein {ECO:0000313|EMBL:EDY17728.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
HhH-GPD family protein
PLM3_30_b2_sep16_scaffold_540_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

2032..3036
DNA (1005bp) protein (335aa)
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Ribonuclease Tax=Chthoniobacter flavus Ellin428 RepID=B4D776_9BACT
ribonuclease HIII
PLM3_30_b2_sep16_scaffold_540_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

3066..3566
DNA (501bp) protein (167aa)
Histone family protein DNA-binding protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D775_9BACT
Histone family protein DNA-binding protein {ECO:0000313|EMBL:EDY17726.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
histone family protein DNA-binding protein
PLM3_30_b2_sep16_scaffold_540_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3600..6059)
DNA (2460bp) protein (820aa)
PAS domain S-box Tax=Singulisphaera acidiphila RepID=L0D912_SINAD
PAS domain-containing protein
PAS domain S-box {ECO:0000313|EMBL:AGA25318.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM3_30_b2_sep16_scaffold_540_6
unknown

Not on your lists

6140..6388
DNA (249bp) protein (83aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_540_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

6396..7901
DNA (1506bp) protein (502aa)
Glycosyl transferase family 2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0R9_9BACT
Glycosyl transferase family 2 {ECO:0000313|EMBL:EDY19931.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
family 2 glycosyl transferase
PLM3_30_b2_sep16_scaffold_540_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

7934..8662
DNA (729bp) protein (243aa)
ErfK/YbiS/YcfS/YnhG family protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D3P8_9BACT
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:EDY18878.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ErfK/YbiS/YcfS/YnhG family protein
PLM3_30_b2_sep16_scaffold_540_9
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8790..9038
DNA (249bp) protein (83aa)
30S ribosomal protein S20 Tax=Faecalibacterium sp. CAG:74 RepID=R7I6P1_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
rpsT; 30S ribosomal protein S20 RpsT
PLM3_30_b2_sep16_scaffold_540_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

9169..9765
DNA (597bp) protein (199aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CZP3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20207.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_540_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

9772..10812
DNA (1041bp) protein (347aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component, alpha subunit Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX7_9BACT
PLM3_30_b2_sep16_scaffold_540_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

10809..11792
DNA (984bp) protein (328aa)
acoB; pyruvate dehydrogenase subunit beta (EC:1.2.4.1)
Pyruvate dehydrogenase (Lipoamide), beta subunit Tax=Leptospira borgpetersenii serovar Hardjo-bovis RepID=Q04RI5_LEPBJ
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM3_30_b2_sep16_scaffold_540_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11884..12171
DNA (288bp) protein (96aa)
Catalytic domain of component of various dehydrogenase complexes Tax=Pedosphaera parvula Ellin514 RepID=B9X9V7_9BACT
Catalytic domain of component of various dehydrogenase complexes {ECO:0000313|EMBL:EEF63298.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) component
Displaying 13 items

View Taxonomy