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PLM3_30_b2_sep16_scaffold_925

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_925_1

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comp(2..145)
DNA (144bp) protein (48aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49272.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM3_30_b2_sep16_scaffold_925_2

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comp(197..1312)
DNA (1116bp) protein (372aa)
Putative uncharacterized protein Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D1D7_MYXXD
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49271.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_925_3

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1386..2315
DNA (930bp) protein (310aa)
Aldo/keto reductase Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8C8Q7_MYXFH
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49270.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
aldo/keto reductase
PLM3_30_b2_sep16_scaffold_925_4

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2459..3010
DNA (552bp) protein (184aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CWK8_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49269.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM3_30_b2_sep16_scaffold_925_5

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3094..3825
DNA (732bp) protein (244aa)
Uncharacterized protein Tax=Singulisphaera acidiphila RepID=L0DJ56_SINAD
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49268.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_925_6

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3950..4870
DNA (921bp) protein (307aa)
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKQ0_SINAD
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49267.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
PLM3_30_b2_sep16_scaffold_925_7

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comp(4967..5665)
DNA (699bp) protein (233aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
msrA; peptide methionine sulfoxide reductase MsrA (EC:1.8.4.11)
Methionine-R-sulfoxide reductase bin=GWA2_OP3_53_43 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
PLM3_30_b2_sep16_scaffold_925_8

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5688..6509
DNA (822bp) protein (274aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
hypothetical protein Tax=Rubritalea marina RepID=UPI00037A855F
PLM3_30_b2_sep16_scaffold_925_9

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comp(6470..7840)
DNA (1371bp) protein (457aa)
Hydrolase (Metallo-beta-lactamase superfamily)-like protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CU05_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49252.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
comEC; DNA internalization-related competence protein ComEC/Rec2
PLM3_30_b2_sep16_scaffold_925_10

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comp(7851..8606)
DNA (756bp) protein (252aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49252.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM3_30_b2_sep16_scaffold_925_11

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comp(8779..9273)
DNA (495bp) protein (165aa)
Universal stress protein Tax=Chlorobium limicola (strain DSM 245 / NBRC 103803) RepID=B3EHH5_CHLL2
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49251.1}; Flags: Fragment;; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UspA domain-containing protein
PLM3_30_b2_sep16_scaffold_925_12
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

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9450..10694
DNA (1245bp) protein (415aa)
ATP/GTP-binding domain protein bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
ATPase AAA
Tax=GWB2_Nitrospirae_47_37_curated
PLM3_30_b2_sep16_scaffold_925_13
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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10859..11725
DNA (867bp) protein (289aa)
4-hydroxybenzoate polyprenyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4CYX5_9BACT
4-hydroxybenzoate polyprenyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM3_30_b2_sep16_scaffold_925_14
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(11768..12199)
DNA (432bp) protein (144aa)
Sugar-phosphate isomerase, RpiB/LacA/LacB family {ECO:0000313|EMBL:CCH54341.1}; EC=5.3.1.6 {ECO:0000313|EMBL:CCH54341.1};; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
Sugar-phosphate isomerase, RpiB/LacA/LacB family Tax=Fibrisoma limi BUZ 3 RepID=I2GKB6_9BACT
ribose 5-phosphate isomerase
PLM3_30_b2_sep16_scaffold_925_15
unknown

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comp(12330..12923)
DNA (594bp) protein (198aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_925_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(12987..13943)
DNA (957bp) protein (319aa)
Chaperone protein DnaJ Tax=Pedosphaera parvula Ellin514 RepID=B9XFY3_9BACT
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_925_17
R_Elusimicrobia_61_10, Elusimicrobia, Bacteria

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14243..14917
DNA (675bp) protein (225aa)
Uracil-DNA glycosylase superfamily bin=GWF2_OP3_43_52 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
uracil-DNA glycosylase superfamily protein
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_61_10_curated
PLM3_30_b2_sep16_scaffold_925_18
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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14923..16344
DNA (1422bp) protein (474aa)
Sulfatase bin=GWF2_Lentisphaerae_49_21 species=Paenibacillus sp. genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
sulfatase
Tax=GWF2_Lentisphaerae_49_21_curated
PLM3_30_b2_sep16_scaffold_925_19
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16430..17098)
DNA (669bp) protein (223aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036FCF75
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CAN96937.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM3_30_b2_sep16_scaffold_925_20
Mycobacterium sp. KMS, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(17095..17490)
DNA (396bp) protein (132aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003821BED
selenium-binding protein
Selenium-binding protein {ECO:0000313|EMBL:ABL89725.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (strain KMS).;"
Displaying 20 items

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