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PLM3_30_b2_sep16_scaffold_296

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_296_1
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..776)
DNA (774bp) protein (258aa)
dihydrolipoamide succinyltransferase Tax=Frankia sp. BCU110501 RepID=UPI00037C2813
Dihydrolipoamide succinyltransferase {ECO:0000313|EMBL:EWS99589.1}; Flags: Fragment;; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
2-oxoglutarate dehydrogenase E2 component
PLM3_30_b2_sep16_scaffold_296_2
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(790..1836)
DNA (1047bp) protein (349aa)
putative 2-oxoisovalerate dehydrogenase subunit beta (EC:1.2.4.4)
Putative 2-oxoisovalerate dehydrogenase, beta subunit (Transketolase) Tax=Candidatus Nitrospira defluvii RepID=D8PHS1_9BACT
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_296_3
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(1836..2759)
DNA (924bp) protein (308aa)
putative 2-oxoisovalerate dehydrogenase subunit alpha (EC:1.2.4.4)
Putative 2-oxoisovalerate dehydrogenase, alpha subunit (TPP-binding module) Tax=Candidatus Nitrospira defluvii RepID=D8PHS0_9BACT
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_296_4
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(2762..4150)
DNA (1389bp) protein (463aa)
lpdA; dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase Tax=Actinomadura madurae LIID-AJ290 RepID=U2P5N1_9ACTO
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_296_5
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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4200..5309
DNA (1110bp) protein (370aa)
Aminomethyltransferase Tax=Dermacoccus sp. Ellin185 RepID=E3BCE8_9MICO
glycine cleavage system protein T
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_296_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(5344..5940)
DNA (597bp) protein (199aa)
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_296_7
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6131..6871)
DNA (741bp) protein (247aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
hypothetical protein Tax=Cohnella laeviribosi RepID=UPI000375F5C2
cobalamin 5'-phosphate synthase
PLM3_30_b2_sep16_scaffold_296_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(6864..7985)
DNA (1122bp) protein (374aa)
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (anaerobic pathway of cobalamin biosynthesis, cobT) (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHA5_9BACT
PLM3_30_b2_sep16_scaffold_296_9
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7985..8509)
DNA (525bp) protein (175aa)
adenosylcobinamide kinase Tax=Serinicoccus marinus RepID=UPI0003B49957
Uncharacterized protein {ECO:0000313|EMBL:KIE51593.1}; species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
cobyric acid synthase/cobinamide kinase
PLM3_30_b2_sep16_scaffold_296_10
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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comp(8509..9099)
DNA (591bp) protein (197aa)
Cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:CCM64582.1}; EC=2.5.1.17 {ECO:0000313|EMBL:CCM64582.1};; species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
Cob(I)alamin adenosyltransferase Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z6I4_9ACTN
PLM3_30_b2_sep16_scaffold_296_11
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9096..9905)
DNA (810bp) protein (270aa)
ABC transporter related protein Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y8Q5_THEBD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHI00389.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM3_30_b2_sep16_scaffold_296_12
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(9902..10945)
DNA (1044bp) protein (348aa)
ABC transporter permease Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI00026262FC
ABC-type transporter, integral membrane subunit
Tax=RBG_16_Actinobacteria_70_17_curated
PLM3_30_b2_sep16_scaffold_296_13
Rhodococcus rhodnii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10942..11904)
DNA (963bp) protein (321aa)
Uncharacterized protein Tax=Rhodococcus rhodnii LMG 5362 RepID=R7WRQ6_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:EOM78017.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus rhodnii LMG 5362.;"
periplasmic binding protein
PLM3_30_b2_sep16_scaffold_296_14
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(12232..13467)
DNA (1236bp) protein (412aa)
Multi-sensor signal transduction histidine kinase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C8D6_SPHTD
multi-sensor signal transduction histidine kinase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_296_15
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(13553..14269)
DNA (717bp) protein (239aa)
DNA-binding response regulator Tax=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) RepID=Q9RVP0_DEIRA
DNA-binding response regulator
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_296_16
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

14288..14689
DNA (402bp) protein (134aa)
Uncharacterized protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CD74_THET1
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_296_17
Streptomyces vietnamensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14975..15820
DNA (846bp) protein (282aa)
Rhodanese domain protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBQ5_THET1
thiosulfate sulfurtransferase
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces vietnamensis.;"
PLM3_30_b2_sep16_scaffold_296_18
unknown

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16207..16443
DNA (237bp) protein (79aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_296_19
unknown

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16440..16862
DNA (423bp) protein (141aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_296_20
BJP_08E140C01_Actinomycetales_67_18, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

16971..17408
DNA (438bp) protein (146aa)
Fe-S cluster assembly protein SufB Tax=Aestuariimicrobium kwangyangense RepID=UPI0003B363C6
sufB; FeS assembly protein SufB
Tax=BJP_08E140C01_Actinomycetales_67_18
Displaying 20 items

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