ggKbase home page

PLM3_30_b2_sep16_scaffold_86_1

Organism: PLM3_30_b2_sep16_Actinobacteria_70_20

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 2 ASCG 15 / 38 MC: 1
Location: 1..1305

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA Tax=Frankia RepID=Q6TE13_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 76.1
  • Coverage: 330.0
  • Bit_score: 460
  • Evalue 1.50e-126
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 64.1
  • Coverage: 401.0
  • Bit_score: 459
  • Evalue 5.50e-127
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 91.0
  • Coverage: 434.0
  • Bit_score: 766
  • Evalue 1.00e-218

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_19FT_COMBO_Actinobacteria_70_19_curated → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1305
TTGACCGAAGTCACCCGCGACCTGGGTCTGGAGGAAGCGAAGGAACAGATCACCGCCCGCGGGCGTGAGCGCGGCTTCGTGACCTCGGACGACCTGCTCGAATCGGTTCCCGTCGACGACTTCACGCCCGAACAGGTCGAGGAGTTCCTGACCCAAGTCGAGGAGCATCTTCGCGGCGAGGGGATCGAGGTCATCGAGGTCCCCGGCGACGAGGTCGACGGGTCCGCCCAGCGCCAGCTCGACGTGGATCTCCTGAAGGCACCCACGAACGACCCCGTCCGGATGTACCTGAAGGAGATCGGCAAGGTCCCCCTCCTCACGGCCGCCCAGGAGGTCGATCTCGCCCGGCGCATCGAGGCGGGGGAGTTCGCGACCGTGCTCCGCGAGCTCACGGAGGAGGAAGACCGGGTCGACCAGAAGCGCCTTCGCCTGGTGACCGAGTCGGTCGTCGCGATCCGCGATCATCAGGTCGAGAAGTTCGGCAAGGTCGAGGGGATCGGCCGGGACCGGATCGGCAAGACCTACAAGCCGAAGACCCGCGAGGCGCTCGACGACTTCCTGCGCCGCGTCGAACGCGACGGACAGCTCGCGAAGCGCAAGCTGATCGAGGCGAACCTGCGCCTGGTGGTCTCGATCGCGAAGCGGTACGTCGGCCGCGGGATGTTGTTCCTCGATCTGATCCAGGAGGGCAACCTCGGGCTGATCCGCGCGGTCGAGAAGTTCGACTACTCCAAGGGCTACAAGTTCTCGACGTACGCGACGTGGTGGATCCGCCAGGCGATCACCCGAGCGATCGCCGACCAGGCCCGGACGATCCGCATCCCGGTGCACATGGTCGAGACGATCAACAAGCTCGTCCGCATCCAACGACAGCTCCTGCAGGATCTCGGCCGCGAGCCGCTCCCGGAGGAGATCGGGCGGCAGATGGGCATCCCCGCCGACAAGGTGCGCGAGATCTTGAAGGTGAGCCAGGAGCCCGTCTCCCTCGAGACCCCGATCGGGGAGGAGGAGGACTCGCACCTCGGCGACTTCATCGAGGACTCGGACGCCGTGGTCCCCGTCGACGCGGCCAGCTTCATCCTGTTGCAGGAGCAGCTCGAGTCCGTGCTCCACACCCTGTCCGAGCGGGAGAAGAAGGTCATCCAGCTCCGGTTCGGGCTCCTCGACGGCCACCCGCGCACGCTGGAGGAGGTCGGACGCGAGTTCGGCGTCACCCGGGAACGGATCCGGCAGATCGAGTCGAAGACCCTGTCGAAGCTCCGCCACCCGTCACGATCGCAGAAGCTGCGCGACTACCTCGAGTAG
PROTEIN sequence
Length: 435
LTEVTRDLGLEEAKEQITARGRERGFVTSDDLLESVPVDDFTPEQVEEFLTQVEEHLRGEGIEVIEVPGDEVDGSAQRQLDVDLLKAPTNDPVRMYLKEIGKVPLLTAAQEVDLARRIEAGEFATVLRELTEEEDRVDQKRLRLVTESVVAIRDHQVEKFGKVEGIGRDRIGKTYKPKTREALDDFLRRVERDGQLAKRKLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQDLGREPLPEEIGRQMGIPADKVREILKVSQEPVSLETPIGEEEDSHLGDFIEDSDAVVPVDAASFILLQEQLESVLHTLSEREKKVIQLRFGLLDGHPRTLEEVGREFGVTRERIRQIESKTLSKLRHPSRSQKLRDYLE*