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PLM3_30_b2_sep16_scaffold_672_11

Organism: PLM3_30_b2_sep16_Actinobacteria_70_20

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 2 ASCG 15 / 38 MC: 1
Location: comp(4644..5450)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 28 subunit, FliA/WhiG family Tax=Frankia sp. (strain EAN1pec) RepID=A8L2N7_FRASN similarity UNIREF
DB: UNIREF100
  • Identity: 56.5
  • Coverage: 253.0
  • Bit_score: 269
  • Evalue 3.00e-69
FliA/WhiG family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 56.5
  • Coverage: 253.0
  • Bit_score: 269
  • Evalue 8.50e-70
RNA polymerase, sigma 28 subunit, FliA/WhiG family {ECO:0000313|EMBL:ABW10430.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.5
  • Coverage: 253.0
  • Bit_score: 269
  • Evalue 4.20e-69

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Taxonomy

Frankia sp. EAN1pec → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 807
ATGAGCTCGTTCGAACGTCCGATCGGCTCCACCGATCGTGAGGTGGAAACCGAGCTGTTCAAGCGGCTGCCCGATGACGCCGAGGCCCGTGAGCGACTGGTCGGGATGTTCCTCCCACTCGCGGAGTACCTCGCGCGTCGGTTCGACCGGCGGGGCGAGCCGCTGGAGGACCTCGTGCAGGTCGCGAGCGTCGGACTCCTGAACGCGATCGACCGGTTCGACGTGGAGCGGGACGTCCAGTTCTCCACGTACGCCGCCGTCACGATCATCGGCGAGCTCAAGCGGCATTTCCGCGACAAGGGATGGGCGATCCGCGTGCCGCGGCGGCTCCAGGAGGTCGGGCTGCGCGTGAACGCCGTCCTCCCCGAGCTCTCGCAGGAGCTCGGCCGCTCGCCGACCGTGGAGGAGATCGCCGCGCGGTGCCAGGCGTCACCCGAGGAGATCCTCGACGCGATGGAGGCGGTGCAGGCCTACTCGACGACATCGCTCGACTCGCCGGTCGGGGAGGAGGGCGCGGCGCCGATCGACGTGCTCGGCGGCGACGACCCCTCGCTCGAGATCCTCGAGGGCTGGGCGTCGGTGGCGCCCGCGGTGAAGGAGCTGCCGGAGCGGGAACGGAGGGTGCTGTACCTTCGCTTCTTCCGCGGGCTCACGCAGTCCGAGATCGCCAAGGAGGTCGGCGTCTCCCAGATGCACGTGAGCAGGATCCTCTCGCAGACCCTTTCGTTCCTCCGGGGCGCGGTGCTCGAAGAAGGGGATCCGCTCCGCGACACGGAACCTCACGGAGCGGATCTCGACGAGCCGTAG
PROTEIN sequence
Length: 269
MSSFERPIGSTDREVETELFKRLPDDAEARERLVGMFLPLAEYLARRFDRRGEPLEDLVQVASVGLLNAIDRFDVERDVQFSTYAAVTIIGELKRHFRDKGWAIRVPRRLQEVGLRVNAVLPELSQELGRSPTVEEIAARCQASPEEILDAMEAVQAYSTTSLDSPVGEEGAAPIDVLGGDDPSLEILEGWASVAPAVKELPERERRVLYLRFFRGLTQSEIAKEVGVSQMHVSRILSQTLSFLRGAVLEEGDPLRDTEPHGADLDEP*