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PLM3_30_b2_sep16_scaffold_672

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b2_sep16_scaffold_672_1
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..119)
DNA (117bp) protein (39aa)
Metallophosphoesterase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A3P3_THECD
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ACY96168.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_30_b2_sep16_scaffold_672_2
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(116..370)
DNA (255bp) protein (85aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH97983.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM3_30_b2_sep16_scaffold_672_3
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(367..1008)
DNA (642bp) protein (214aa)
Uncharacterized protein bin=GWA1_Deltaproteobacteria_52_35 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
hypothetical protein
Tax=GWA1_Bdellovibrionales_52_35_curated
PLM3_30_b2_sep16_scaffold_672_4
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(1085..2026)
DNA (942bp) protein (314aa)
DNA topoisomerase (EC:5.99.1.2)
DNA topoisomerase {ECO:0000313|EMBL:ADB51848.1}; EC=5.99.1.2 {ECO:0000313|EMBL:ADB51848.1};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
DNA topoisomerase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZ83_CONWI
PLM3_30_b2_sep16_scaffold_672_5
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2240..2683
DNA (444bp) protein (148aa)
Putative Hemerythrin HHE cation binding region Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PW15_CLOSD
putative Hemerythrin HHE cation binding region
Putative Hemerythrin HHE cation binding region {ECO:0000313|EMBL:CBH20630.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
PLM3_30_b2_sep16_scaffold_672_6
unknown

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2744..2872
DNA (129bp) protein (43aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_672_7
unknown

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2869..3360
DNA (492bp) protein (164aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_672_8
Actinomyces sp. oral taxon 178, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3402..3674)
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Actinomyces sp. oral taxon 178 str. F0338 RepID=E8JJ08_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFW09529.1}; species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces sp. oral taxon 178 str. F0338.;"
csbD; stress response protein CsbD
PLM3_30_b2_sep16_scaffold_672_9
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3719..4237)
DNA (519bp) protein (173aa)
Uncharacterized protein Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SC97_GEOOG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB76225.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM3_30_b2_sep16_scaffold_672_10
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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4450..4626
DNA (177bp) protein (59aa)
Uncharacterized protein Tax=Frankia sp. QA3 RepID=I8QMQ6_9ACTO
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_672_11
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4644..5450)
DNA (807bp) protein (269aa)
RNA polymerase, sigma 28 subunit, FliA/WhiG family Tax=Frankia sp. (strain EAN1pec) RepID=A8L2N7_FRASN
FliA/WhiG family RNA polymerase sigma factor
RNA polymerase, sigma 28 subunit, FliA/WhiG family {ECO:0000313|EMBL:ABW10430.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_30_b2_sep16_scaffold_672_12
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5447..5851)
DNA (405bp) protein (135aa)
anti-sigma regulatory factor Tax=Salinispora pacifica RepID=UPI00037EAF5D
putative anti-sigma regulatory factor
Putative anti-sigma regulatory factor {ECO:0000313|EMBL:AGZ45862.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM3_30_b2_sep16_scaffold_672_13
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5943..6278
DNA (336bp) protein (112aa)
anti-sigma B factor antagonist Tax=Streptomyces RepID=UPI000363EABD
anti-sigma factor antagonist
Anti-sigma B factor antagonist {ECO:0000313|EMBL:AKH83212.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
PLM3_30_b2_sep16_scaffold_672_14
unknown

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6298..6672
DNA (375bp) protein (125aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_672_15
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

6766..8205
DNA (1440bp) protein (480aa)
Putative PAS/PAC sensor protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARZ9_RUBXD
putative PAS/PAC sensor protein
Putative PAS/PAC sensor protein {ECO:0000313|EMBL:ABG05829.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_30_b2_sep16_scaffold_672_16
unknown

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8410..8667
DNA (258bp) protein (86aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_672_17
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8727..9461)
DNA (735bp) protein (245aa)
histidine kinase Tax=Streptomyces sp. 351MFTsu5.1 RepID=UPI0003601514
Uncharacterized protein {ECO:0000313|EMBL:EMF00946.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobaraensis NBRC 13819 = DSM 40847.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_672_18
Isoptericola variabilis, Isoptericola, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9510..10397)
DNA (888bp) protein (296aa)
Putative uncharacterized protein Tax=Isoptericola variabilis (strain 225) RepID=F6FSV8_ISOV2
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEG43099.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Isoptericola.;" source="Isoptericola variabilis (strain 225).;"
PLM3_30_b2_sep16_scaffold_672_19
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(10505..10975)
DNA (471bp) protein (157aa)
hypothetical protein Tax=Longispora albida RepID=UPI00037178D1
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_672_20
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(10976..11194)
DNA (219bp) protein (73aa)
ATP-dependent Clp protease adaptor protein ClpS Tax=Celosia cristata RepID=Q0E5Q6_9CARY
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_672_21
unknown

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comp(11352..11519)
DNA (168bp) protein (56aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_672_22
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(11600..12796)
DNA (1197bp) protein (399aa)
Uncharacterized protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W2M1_9ACTO
hypothetical protein
Tax=RBG_16_Actinobacteria_67_15_curated
PLM3_30_b2_sep16_scaffold_672_23
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13162..13530
DNA (369bp) protein (123aa)
Short chain dehydrogenase Tax=Rhodococcus opacus M213 RepID=K8XAG7_RHOOP
Peroxisomal trans-2-enoyl-CoA reductase {ECO:0000313|EMBL:EWM10678.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
short-chain dehydrogenase
PLM3_30_b2_sep16_scaffold_672_24
Geobacillus sp. Y412MC52, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13521..14585)
DNA (1065bp) protein (355aa)
Alcohol dehydrogenase zinc-binding domain protein Tax=Geobacillus sp. (strain C56-T3) RepID=D7D1X9_GEOSC
dehydrogenase
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ADU95185.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. (strain Y412MC52).;"
PLM3_30_b2_sep16_scaffold_672_25
unknown

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comp(14630..15082)
DNA (453bp) protein (151aa)

This feature has no annotations

PLM3_30_b2_sep16_scaffold_672_26
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15254..15850
DNA (597bp) protein (199aa)
hypothetical protein Tax=Mycobacterium sp. 155 RepID=UPI00036ABADB
Uncharacterized protein {ECO:0000313|EMBL:ETK36612.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hypothetical protein
PLM3_30_b2_sep16_scaffold_672_27
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

15908..16954
DNA (1047bp) protein (349aa)
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase IV Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6YAC4_THEBD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_30_b2_sep16_scaffold_672_28
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16951..17346
DNA (396bp) protein (132aa)
Uridine phosphorylase (EC:2.4.2.3)
Putative uridine phosphorylase Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DIL0_CLOS4
Putative uridine phosphorylase {ECO:0000313|EMBL:ERI96615.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
Displaying 28 items

View Taxonomy