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PLM3-1_50_b1_sep16_scaffold_1893

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_1893_1
unknown

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3..215
DNA (213bp) protein (71aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_1893_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(369..1469)
DNA (1101bp) protein (367aa)
dbh2; DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
DNA polymerase IV Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN64_NITGG
PLM3-1_50_b1_sep16_scaffold_1893_3
unknown

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1711..2940
DNA (1230bp) protein (410aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_1893_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3042..3272
DNA (231bp) protein (77aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGA9_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58830.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1893_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3390..3620
DNA (231bp) protein (77aa)
DNA/RNA-binding protein Alba Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBZ0_NITGG
albA2; DNA/RNA-binding protein Alba
DNA/RNA-binding protein Alba {ECO:0000256|HAMAP-Rule:MF_01122}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1893_6
unknown

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comp(3972..4235)
DNA (264bp) protein (88aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_1893_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4396..4923)
DNA (528bp) protein (176aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15726.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_1893_8
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5023..6555)
DNA (1533bp) protein (511aa)
Putative Sodium:solute symporter family protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J3_9ARCH
Na+/proline symporter
Na+/proline symporter {ECO:0000313|EMBL:AIF84942.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1893_9
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7280..7765
DNA (486bp) protein (162aa)
agmatinase (EC:3.5.3.11)
Agmatinase {ECO:0000313|EMBL:AIF84945.1}; EC=3.5.3.11 {ECO:0000313|EMBL:AIF84945.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative arginase family protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J6_9ARCH
PLM3-1_50_b1_sep16_scaffold_1893_10
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7786..8172
DNA (387bp) protein (129aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J7_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15734.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_1893_11
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8311..10056)
DNA (1746bp) protein (582aa)
Putative TCP-1/cpn60 chaperonin family protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J0_9ARCH
ths1; archaeal thermosome subunit
Archaeal thermosome subunit {ECO:0000313|EMBL:AIC15743.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_1893_12

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10131..10433
DNA (303bp) protein (101aa)
urease, gamma subunit (EC:3.5.1.5)
Urea amidohydrolase gamma subunit (UreAB) {ECO:0000313|EMBL:AIE94894.1}; EC=3.5.1.5 {ECO:0000313|EMBL:AIE94894.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote AD1000_54_E04.;"
urease subunit gamma Tax=cellular organisms RepID=UPI00037A47A6
PLM3-1_50_b1_sep16_scaffold_1893_13
Candidatus Nitrosopumilus sp. D3C, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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10447..10815
DNA (369bp) protein (123aa)
ureB; Urease subunit beta (EC:3.5.1.5)
Urease subunit beta {ECO:0000313|EMBL:AJM92605.1}; EC=3.5.1.5 {ECO:0000313|EMBL:AJM92605.1};; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. D3C.;"
Urea amidohydrolase beta subunit Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BE67_9ARCH
PLM3-1_50_b1_sep16_scaffold_1893_14
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10818..12536
DNA (1719bp) protein (573aa)
ureC2; urease subunit alpha (EC:3.5.1.5)
Urease {ECO:0000256|RuleBase:RU000510}; EC=3.5.1.5 {ECO:0000256|RuleBase:RU000510};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Putative amidohydrolase family protein Tax=uncultured marine crenarchaeote HF4000_ANIW133O4 RepID=B3T4E1_9ARCH
PLM3-1_50_b1_sep16_scaffold_1893_15
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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12601..12855
DNA (255bp) protein (85aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J5_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84953.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1893_16
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

12988..14442
DNA (1455bp) protein (485aa)
Putative arsenical pump membrane protein Tax=uncultured marine crenarchaeote HF4000_ANIW133I6 RepID=B3T404_9ARCH
putative arsenical pump membrane protein
Putative arsenical pump membrane protein {ECO:0000313|EMBL:AIC15835.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_1893_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(14548..14754)
DNA (207bp) protein (69aa)
Stomatin-like protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILQ0_NITGG
stomatin-like protein
Stomatin-like protein {ECO:0000313|EMBL:AFU57214.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1893_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14923..16083
DNA (1161bp) protein (387aa)
cysS1; cysteine--tRNA ligase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000313|EMBL:AFU58835.1}; EC=6.1.1.16 {ECO:0000313|EMBL:AFU58835.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Cysteine--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGB2_NITGG
PLM3-1_50_b1_sep16_scaffold_1893_19
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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16073..16822
DNA (750bp) protein (250aa)
Acetyltransferase (GNAT) domain
Acetyltransferase (GNAT) domain {ECO:0000313|EMBL:AIF83707.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1893_trna_1
unknown

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16949..17027
DNA (79bp)
transferRNA Pseudo
Displaying 20 items

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