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PLM3-1_50_b1_sep16_scaffold_2612

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_2612_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(523..1062)
DNA (540bp) protein (180aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFW4_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57703.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2612_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(1112..1417)
DNA (306bp) protein (102aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMA7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57704.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2612_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(1532..2887)
DNA (1356bp) protein (452aa)
UbiD family decarboxylase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDI0_NITGG
UbiD family decarboxylase
UbiD family decarboxylase {ECO:0000313|EMBL:AFU57705.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2612_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(2890..3249)
DNA (360bp) protein (120aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I8X5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57706.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2612_5
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3410..4048)
DNA (639bp) protein (213aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG74_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16081.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_2612_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4111..4443)
DNA (333bp) protein (111aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMM0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60402.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2612_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4518..4853)
DNA (336bp) protein (112aa)
Nascent polypeptide-associated complex protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILG6_NITGG
putative nascent polypeptide-associated complex protein
Nascent polypeptide-associated complex protein {ECO:0000256|HAMAP-Rule:MF_00814}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_2612_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4850..5326)
DNA (477bp) protein (159aa)
Putative PUA domain profile Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP29_NITGG
PUA domain profile
Putative PUA domain profile {ECO:0000313|EMBL:AFU60404.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2612_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5521..5994
DNA (474bp) protein (158aa)
Putative MBF1 (Multiprotein Bridging factor) Tax=Candidatus Nitrososphaera gargensis RepID=K0IG80_NITGG
MBF1 (multiprotein Bridging factor)
Putative MBF1 (Multiprotein Bridging factor) {ECO:0000313|EMBL:AFU60406.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2612_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5987..7081
DNA (1095bp) protein (365aa)
GTPase HflX Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMM2_NITGG
GTP-binding protein
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2612_11
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7081..7341
DNA (261bp) protein (87aa)
tRNA (cytidine(56)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00077}; EC=2.1.1.206 {ECO:0000256|HAMAP-Rule:MF_00077};; tRNA ribose 2'-O-methyltransferase aTrm56 {ECO:0000256|HAMAP-Rule:MF_00077}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
tRNA (cytidine(56)-2'-O)-methyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILG8_NITGG
putative tRNA ribose 2'-O-methyltransferase
PLM3-1_50_b1_sep16_scaffold_2612_12
uncultured crenarchaeote, Crenarchaeota, Archaea

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7298..7588
DNA (291bp) protein (97aa)
Putative SpoU-like RNA methylase Tax=uncultured crenarchaeote RepID=Q2V9D2_9CREN
Putative SpoU-like RNA methylase {ECO:0000313|EMBL:ABB88995.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_2612_13
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8204..9565)
DNA (1362bp) protein (454aa)
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS {ECO:0000256|HAMAP-Rule:MF_01892}; Short=tRNA(Ile2)-agm2C synthetase {ECO:0000256|HAMAP-Rule:MF_01892};; EC=6.3.4.22 {ECO:0000256|HAMAP-Rule:MF_01892};; tRNA(Ile2) agmatidine synthetase {ECO:0000256|HAMAP-Rule:MF_01892}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP49_NITGG
putative DNA-binding protein containing a Zn-ribbon domain
PLM3-1_50_b1_sep16_scaffold_2612_14
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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9759..10649
DNA (891bp) protein (297aa)
Conserved uncharacterized protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FL84_STIAD
F5/8 type C domain protein {ECO:0000313|EMBL:KFE67957.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_2612_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(10732..11154)
DNA (423bp) protein (141aa)
Putative polyketide cyclase/dehydrase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILS0_NITGG
polyketide cyclase/dehydrase
Putative polyketide cyclase/dehydrase {ECO:0000313|EMBL:AFU59637.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2612_16
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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11241..11699
DNA (459bp) protein (153aa)
Putative cyclase/dehydrase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL22_NITGG
putative cyclase/dehydrase
Putative cyclase/dehydrase {ECO:0000313|EMBL:AIC14231.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_2612_17
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11696..13120)
DNA (1425bp) protein (475aa)
Multidrug-efflux transporter Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CV73_9ARCH
arabinose efflux permease family protein
Arabinose efflux permease family protein {ECO:0000313|EMBL:AIF83025.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_2612_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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13414..14598
DNA (1185bp) protein (395aa)
DUF650 and DUF651 domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKD8_NITGG
hypothetical protein
DUF650 and DUF651 domain-containing protein {ECO:0000313|EMBL:AFU58857.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2612_19
unknown

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comp(14722..15051)
DNA (330bp) protein (110aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2612_20
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15642..16031
DNA (390bp) protein (130aa)
Type I secretion target GGXGXDXXX repeat protein domain protein Tax=Labrenzia alexandrii DFL-11 RepID=B9QYK9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KEO61303.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
hemolysin-type calcium-binding region
PLM3-1_50_b1_sep16_scaffold_2612_21
unknown

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comp(16098..16931)
DNA (834bp) protein (278aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2612_22
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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17075..17632
DNA (558bp) protein (186aa)
Putative NADPH-dependent FMN reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJE9_NITGG
putative NADPH-dependent FMN reductase
Putative NADPH-dependent FMN reductase {ECO:0000313|EMBL:AFU60150.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2612_23

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17766..18569
DNA (804bp) protein (268aa)
putative terminase, large subunit
Uncharacterized protein {ECO:0000313|EMBL:KKK78261.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_50_b1_sep16_scaffold_2612_24
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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18835..19572
DNA (738bp) protein (246aa)
serine/threonine phosphatase Tax=Scytonema hofmanni RepID=UPI00034715F9
Serine/threonine protein phosphatase {ECO:0000313|EMBL:KIE10453.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
protein phosphatase PrpC
PLM3-1_50_b1_sep16_scaffold_2612_25
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(19698..20108)
DNA (411bp) protein (137aa)
glyoxalase/bleomycin resistance protein/dioxygenase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_50_b1_sep16_scaffold_2612_26
unknown

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20335..20463
DNA (129bp) protein (43aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2612_27
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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20565..20921
DNA (357bp) protein (119aa)
hypothetical protein Tax=candidate division YNPFFA RepID=UPI000380515C
hypothetical protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
PLM3-1_50_b1_sep16_scaffold_2612_28
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(20953..21825)
DNA (873bp) protein (291aa)
Putative geranylgeranyl pyrophosphate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGX6_NITGG
gds2; geranylgeranyl pyrophosphate synthase
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:AIC15388.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_2612_trna_2
unknown

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comp(21992..22067)
DNA (76bp)
transferRNA Pseudo
PLM3-1_50_b1_sep16_scaffold_2612_29
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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22291..22947
DNA (657bp) protein (219aa)
Putative coenzyme PQQ synthesis protein c Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMQ6_NITGG
TENA/THI-4 domain protein
TENA/THI-4 domain protein {ECO:0000313|EMBL:AIC15381.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Displaying items 1-30 of 31 in total

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