ggKbase home page

PLM3-1_50_b1_sep16_scaffold_208

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_208_1
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

2..1189
DNA (1188bp) protein (396aa)
dpo; DNA polymerase, family B (EC:2.7.7.7)
DNA polymerase {ECO:0000256|RuleBase:RU000442}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU000442};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
DNA polymerase Tax=uncultured Candidatus Nitrosocaldus sp. RepID=Q1ERA4_9CREN
PLM3-1_50_b1_sep16_scaffold_208_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

1257..2207
DNA (951bp) protein (317aa)
Putative agmatinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP15_NITGG
agmatinase
Putative agmatinase {ECO:0000313|EMBL:AFU60334.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_208_3
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(2288..2497)
DNA (210bp) protein (70aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP16_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15946.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_208_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(2573..4459)
DNA (1887bp) protein (629aa)
thrS; threonine--tRNA ligase (EC:6.1.1.3)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Threonine--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILD5_NITGG
PLM3-1_50_b1_sep16_scaffold_208_5
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(4525..6192)
DNA (1668bp) protein (556aa)
Glycosyl transferase family protein Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B7G6_9ARCH
glycosyl transferase
Glycosyl transferase family protein {ECO:0000313|EMBL:AFS81112.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus koreensis AR1.;"
PLM3-1_50_b1_sep16_scaffold_208_6
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(6394..7632)
DNA (1239bp) protein (413aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMF3_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16068.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_208_7

Not on your lists

comp(7687..8550)
DNA (864bp) protein (288aa)
NDP-sugar dehydrogenase Tax=Pyrococcus sp. ST04 RepID=I3RCX7_9EURY
Marine sediment metagenome DNA, contig: S06H3_C04049 {ECO:0000313|EMBL:GAI14910.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NDP-sugar dehydrogenase
PLM3-1_50_b1_sep16_scaffold_208_8
RifOxyA12_full_OD1_Moranbacteria_44_15_curated, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

8750..10213
DNA (1464bp) protein (488aa)
family 2 glycosyl transferase bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
family 2 glycosyl transferase
Tax=RifOxyA12_full_OD1_Moranbacteria_44_15_curated
PLM3-1_50_b1_sep16_scaffold_208_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(10294..11097)
DNA (804bp) protein (268aa)
hisF; imidazole glycerol phosphate synthase (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Imidazole glycerol phosphate synthase subunit HisF Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INU6_NITGG
PLM3-1_50_b1_sep16_scaffold_208_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(11097..11807)
DNA (711bp) protein (237aa)
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKU0_NITGG
PLM3-1_50_b1_sep16_scaffold_208_11
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(11804..12424)
DNA (621bp) protein (207aa)
hisH; imidazole glycerol phosphate synthase subunit hisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Imidazole glycerol phosphate synthase subunit HisH Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM44_NITGG
PLM3-1_50_b1_sep16_scaffold_208_12
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(12425..13024)
DNA (600bp) protein (200aa)
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Imidazoleglycerol-phosphate dehydratase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF46_NITGG
PLM3-1_50_b1_sep16_scaffold_208_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(13032..13985)
DNA (954bp) protein (318aa)
Putative haloacid dehalogenase domain protein hydrolase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INU5_NITGG
haloacid dehalogenase domain-containing protein hydrolase
Putative haloacid dehalogenase domain protein hydrolase {ECO:0000313|EMBL:AFU59984.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_208_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(14006..15055)
DNA (1050bp) protein (350aa)
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase {ECO:0000313|EMBL:AFU59983.1}; EC=2.6.1.9 {ECO:0000313|EMBL:AFU59983.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Histidinol-phosphate aminotransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKT8_NITGG
PLM3-1_50_b1_sep16_scaffold_208_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(15067..16284)
DNA (1218bp) protein (406aa)
hisD; histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Histidinol dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM42_NITGG
PLM3-1_50_b1_sep16_scaffold_208_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(16347..17324)
DNA (978bp) protein (326aa)
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase {ECO:0000313|EMBL:AFU59981.1}; EC=2.4.2.17 {ECO:0000313|EMBL:AFU59981.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
ATP phosphoribosyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF43_NITGG
PLM3-1_50_b1_sep16_scaffold_208_17
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17457..18722)
DNA (1266bp) protein (422aa)
mvaA; 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC:1.1.1.88)
Hydroxymethylglutaryl-CoA reductase, degradative Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D1P2_9ARCH
3-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}; Short=HMG-CoA reductase {ECO:0000256|RuleBase:RU361219};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_208_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(18741..19871)
DNA (1131bp) protein (377aa)
PQQ dependent glucose 1-dehydrogenase (EC:1.1.5.2)
Putative PQQ dependent glucose 1-dehydrogenase {ECO:0000313|EMBL:AFU59979.1}; EC=1.1.5.2 {ECO:0000313|EMBL:AFU59979.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative PQQ dependent glucose 1-dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INU4_NITGG
PLM3-1_50_b1_sep16_scaffold_208_19
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

20270..21388
DNA (1119bp) protein (373aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF31_NITGG
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
Putative PLP-dependent enzyme possibly involved in cell wall biogenesis {ECO:0000313|EMBL:AIF85193.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_208_20
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

21536..22072
DNA (537bp) protein (179aa)
Putative 4Fe-4S ferredoxin iron-sulfur binding domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INU2_NITGG
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Putative 4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:AFU59969.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_208_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

22190..22759
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIZ7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59970.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_208_22
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

22920..23348
DNA (429bp) protein (143aa)
Translation initiation factor 2, subunit beta Tax=uncultured archaeon RepID=I3RKX1_9ARCH
translation initiation factor 2 subunit beta (aeIF-2b)
Translation initiation factor 2 subunit beta (AeIF-2b) {ECO:0000313|EMBL:AIF85186.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_208_23
unknown

Not on your lists

23567..24211
DNA (645bp) protein (215aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_208_24
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

24274..24873
DNA (600bp) protein (200aa)
phosphatidylglycerophosphate synthase (EC:2.7.8.5)
Phosphatidylglycerophosphate synthase {ECO:0000313|EMBL:AIF83983.1}; EC=2.7.8.5 {ECO:0000313|EMBL:AIF83983.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
CDP-alcohol phosphatidyltransferase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin2_Thaum organism_group=Archaeon
Displaying 24 items

View Taxonomy