ggKbase home page

PLM3-1_50_b1_sep16_scaffold_390

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_390_1
Streptomyces sp. MNU77, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(219..488)
DNA (270bp) protein (90aa)
hypothetical protein Tax=Streptomyces globisporus RepID=UPI00029A6B60
Uncharacterized protein {ECO:0000313|EMBL:KIZ26398.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. MNU77.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_390_2
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

589..1176
DNA (588bp) protein (196aa)
GCN5-related N-acetyltransferase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B1M8_STRRD
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACZ87330.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3-1_50_b1_sep16_scaffold_390_3

Not on your lists

1411..2766
DNA (1356bp) protein (452aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Ilumatobacter coccineus YM16-304 RepID=M5A2L1_9ACTN
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:KGA13972.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
PLM3-1_50_b1_sep16_scaffold_390_4
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

2943..4031
DNA (1089bp) protein (363aa)
Prephenate dehydrogenase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1J1_CONWI
prephenate dehydrogenase
Prephenate dehydrogenase {ECO:0000313|EMBL:ADB52154.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3-1_50_b1_sep16_scaffold_390_5
unknown

Not on your lists

comp(3995..4162)
DNA (168bp) protein (56aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_390_6
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

4287..5438
DNA (1152bp) protein (384aa)
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NQH6_MARHT
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3-1_50_b1_sep16_scaffold_390_7
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

5435..6376
DNA (942bp) protein (314aa)
3-isopropylmalate dehydrogenase Tax=Rhodanobacter denitrificans RepID=I4WK95_9GAMM
3-isopropylmalate dehydrogenase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3-1_50_b1_sep16_scaffold_390_8
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

6373..8094
DNA (1722bp) protein (574aa)
Acetolactate synthase Tax=uncultured bacterium A1Q1_fos_568 RepID=L7VYI3_9BACT
acetolactate synthase large subunit, biosynthetic type
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3-1_50_b1_sep16_scaffold_390_9
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

8091..8606
DNA (516bp) protein (172aa)
Acetolactate synthase 3 regulatory subunit Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AVR7_STRRD
acetolactate synthase 3 regulatory subunit
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3-1_50_b1_sep16_scaffold_390_10
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

8625..9626
DNA (1002bp) protein (334aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase Tax=Moorella thermoacetica (strain ATCC 39073) RepID=ILVC_MOOTA
PLM3-1_50_b1_sep16_scaffold_390_11
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

9751..10938
DNA (1188bp) protein (396aa)
Homoserine dehydrogenase Tax=Patulibacter medicamentivorans RepID=H0E4Y5_9ACTN
homoserine dehydrogenase
Tax=RBG_16_Acidobacteria_64_8_curated
PLM3-1_50_b1_sep16_scaffold_390_12
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

10957..11937
DNA (981bp) protein (327aa)
threonine synthase (EC:4.2.3.1)
Threonine synthase Tax=Patulibacter medicamentivorans RepID=H0E4Y4_9ACTN
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PLM3-1_50_b1_sep16_scaffold_390_13
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

11934..12755
DNA (822bp) protein (274aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
homoserine kinase (EC:2.7.1.39)
homoserine kinase Tax=Patulibacter americanus RepID=UPI0003B6DB8B
PLM3-1_50_b1_sep16_scaffold_390_14
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

12752..14458
DNA (1707bp) protein (569aa)
dihydroxyacid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase bin=GWC2_Chloroflexi_73_18 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3-1_50_b1_sep16_scaffold_390_15
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14439..14861)
DNA (423bp) protein (141aa)
hypothetical protein Tax=Nocardia sp. BMG111209 RepID=UPI00038183E1
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:CDX43306.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Endoribonuclease L-PSP
PLM3-1_50_b1_sep16_scaffold_390_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15053..16018
DNA (966bp) protein (322aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase Tax=Rhodanobacter fulvus Jip2 RepID=I4VQU5_9GAMM
PLM3-1_50_b1_sep16_scaffold_390_17
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(16169..16987)
DNA (819bp) protein (273aa)
Vegetative cell wall protein gp1 (Hydroxyproline-richglycoprotein 1) bin=GWC2_Chloroflexi_73_18 species=Nocardioidaceae bacterium Broad-1 genus=unknown taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
peptidase S1 and S6, chymotrypsin
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3-1_50_b1_sep16_scaffold_390_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

17686..18552
DNA (867bp) protein (289aa)
Prephenate dehydratase {ECO:0000313|EMBL:CDM65582.1}; EC=4.2.1.51 {ECO:0000313|EMBL:CDM65582.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein Tax=Aigarchaeota archaeon SCGC AAA471-G05 RepID=UPI0003723E62
prephenate dehydratase
PLM3-1_50_b1_sep16_scaffold_390_19
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

18549..18845
DNA (297bp) protein (99aa)
P-protein Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YA78_DICT6
Tax=RBG_16_Actinobacteria_64_13_curated
PLM3-1_50_b1_sep16_scaffold_390_20
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(18849..19436)
DNA (588bp) protein (196aa)
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33 4.2.1.35)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000313|EMBL:CCW36527.1};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
3-isopropylmalate dehydratase small subunit Tax=Chthonomonas calidirosea T49 RepID=S0EZR4_9BACT
PLM3-1_50_b1_sep16_scaffold_390_21
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19433..19549)
DNA (117bp) protein (39aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
isopropylmalate isomerase large subunit (EC:4.2.1.33)
isopropylmalate isomerase Tax=Kiloniella laminariae RepID=UPI0003812081
Displaying 21 items

View Taxonomy