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PLM3-1_50_b1_sep16_scaffold_3696

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_3696_1
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

3..200
DNA (198bp) protein (66aa)
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_3696_2
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(197..1006)
DNA (810bp) protein (270aa)
Binding-protein-dependent transport system inner membrane protein Tax=Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) RepID=D3PTA2_MEIRD
binding-protein-dependent transport system inner membrane protein
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_3696_3
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(1033..1875)
DNA (843bp) protein (281aa)
Binding-protein-dependent transport systems inner membrane component Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C395_SPHTD
binding-protein-dependent transport system inner membrane protein
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_3696_4
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(1918..3189)
DNA (1272bp) protein (424aa)
Putative permidine/putrescine ABC transporter,periplasmic spermidine/putrescine-binding protein Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L0S5_THERP
putative permidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_3696_5
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(3186..4310)
DNA (1125bp) protein (375aa)
Spermidine/putrescine ABC transporter ATPase bin=GWC2_Chloroflexi_73_18 species=Acidocella sp. MX-AZ02 genus=Acidocella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
potA; polyamine transport ATP-binding protein potA
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_3696_6
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(4323..5363)
DNA (1041bp) protein (347aa)
xthA; exodeoxyribonuclease III (EC:3.1.11.2) bin=bin8_Chloro species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
xthA; exodeoxyribonuclease III (EC:3.1.11.2)
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_3696_7
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(5377..6033)
DNA (657bp) protein (219aa)
amino acid-binding protein; K06862 energy-converting hydrogenase B subunit Q bin=CNBR_ACIDO species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ACT domain-containing protein
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_3696_8
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(6075..6362)
DNA (288bp) protein (96aa)
hypothetical protein bin=bin8_Chloro species=Actinopolymorpha alba genus=Actinopolymorpha taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_3696_9
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

6462..6830
DNA (369bp) protein (123aa)
Arsenate reductase related protein bin=GWC2_Chloroflexi_73_18 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
arsenate reductase
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3-1_50_b1_sep16_scaffold_3696_10
unknown

Not on your lists

comp(6898..7161)
DNA (264bp) protein (88aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_3696_11
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

7349..7978
DNA (630bp) protein (210aa)
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_3696_12
unknown

Not on your lists

comp(8038..8232)
DNA (195bp) protein (65aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_3696_13
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

8369..8689
DNA (321bp) protein (107aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XHS5_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3-1_50_b1_sep16_scaffold_3696_14
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8686..9528
DNA (843bp) protein (281aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XHS4_9BACT
Tax=RBG_16_Planctomycetes_64_12_curated
PLM3-1_50_b1_sep16_scaffold_3696_15
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

9709..10473
DNA (765bp) protein (255aa)
DNA-binding protein Tax=Nocardiopsis potens RepID=UPI000347EFB2
hypothetical protein
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_3696_16
unknown

Not on your lists

10492..10680
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_3696_17
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(10845..11219)
DNA (375bp) protein (125aa)
Rieske (2Fe-2S) iron-sulfur domain protein bin=GWC2_Chloroflexi_73_18 species=Methanolinea tarda genus=Methanolinea taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Rieske (2Fe-2S) iron-sulfur domain-containing protein
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_3696_18
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(11406..13091)
DNA (1686bp) protein (562aa)
putative drug transport protein bin=bin8_Chloro species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
Multidrug resistance protein B
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_3696_19
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(13096..13686)
DNA (591bp) protein (197aa)
Transcriptional regulator bin=GWC2_Chloroflexi_73_18 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
MarR family transcriptional regulator
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_3696_20
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

13758..14729
DNA (972bp) protein (324aa)
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein bin=GWC2_Chloroflexi_73_18 species=Streptosporangium roseum genus=Streptosporangium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ssuD; monooxygenase
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_3696_21
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(14996..16210)
DNA (1215bp) protein (405aa)
Glutamine-fructose-6-phosphate transaminase (Isomerizing) bin=GWC2_Chloroflexi_73_18 species=unknown genus=unknown taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
putative RpiR family transcriptional regulator
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3-1_50_b1_sep16_scaffold_3696_22
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

16331..17239
DNA (909bp) protein (303aa)
luciferase-like protein bin=bin8_Chloro species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
F420-dependent methylene-tetrahydromethanopterin reductase
Tax=CSP1_4_Chloroflexi
PLM3-1_50_b1_sep16_scaffold_3696_23
unknown

Not on your lists

comp(17236..17949)
DNA (714bp) protein (238aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_3696_24
unknown

Not on your lists

comp(17993..18382)
DNA (390bp) protein (130aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_3696_25
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18499..18930)
DNA (432bp) protein (144aa)
superoxide dismutase (EC:1.15.1.1)
Superoxide dismutase {ECO:0000313|EMBL:ABK52339.1}; EC=1.15.1.1 {ECO:0000313|EMBL:ABK52339.1};; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
Superoxide dismutase Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LSC9_ACIC1
PLM3-1_50_b1_sep16_scaffold_3696_26
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(19066..20253)
DNA (1188bp) protein (396aa)
polysaccharide biosynthesis protein bin=GWC2_Chloroflexi_73_18 species=Rhodopirellula maiorica genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
membrane protein involved in the export of O-antigen and teichoic acid
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3-1_50_b1_sep16_scaffold_3696_27
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(20211..20636)
DNA (426bp) protein (142aa)
polysaccharide biosynthesis protein bin=GWC2_Chloroflexi_73_18 species=Rhodopirellula maiorica genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3-1_50_b1_sep16_scaffold_3696_28
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20730..21434)
DNA (705bp) protein (235aa)
Dimethylmenaquinone methyltransferase Tax=Thiocapsa marina 5811 RepID=F9UDL3_9GAMM
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:EGV17660.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
Dimethylmenaquinone methyltransferase
PLM3-1_50_b1_sep16_scaffold_3696_29
unknown

Not on your lists

comp(21528..21731)
DNA (204bp) protein (68aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_3696_30
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

21846..22886
DNA (1041bp) protein (347aa)
Putative glycosyl hydrolase bin=GWC2_Chloroflexi_73_18 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
spore coat assembly protein SafA
Tax=RBG_16_RIF_CHLX_70_13_curated
Displaying items 1-30 of 35 in total

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