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PLM1_30_b1_sep16_scaffold_1006

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_30_b1_sep16_scaffold_1006_1
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(38..1459)
DNA (1422bp) protein (474aa)
Coenzyme F390 synthetase-like protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARS1_RUBXD
coenzyme F390 synthetase-like protein
Coenzyme F390 synthetase-like protein {ECO:0000313|EMBL:ABG05907.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM1_30_b1_sep16_scaffold_1006_2
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(1461..2093)
DNA (633bp) protein (211aa)
TetR family transcriptional regulator Tax=Patulibacter americanus RepID=UPI0003B43AA8
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABG05906.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM1_30_b1_sep16_scaffold_1006_3
unknown

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comp(2135..2521)
DNA (387bp) protein (129aa)

This feature has no annotations

PLM1_30_b1_sep16_scaffold_1006_4
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(2605..3117)
DNA (513bp) protein (171aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI0003631F8B
Uncharacterized protein {ECO:0000313|EMBL:KJK44206.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
hypothetical protein
PLM1_30_b1_sep16_scaffold_1006_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3223..3411
DNA (189bp) protein (63aa)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
PLM1_30_b1_sep16_scaffold_1006_6
Knoellia flava, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3423..4049
DNA (627bp) protein (209aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI0003602BE6
Uncharacterized protein {ECO:0000313|EMBL:KGN30475.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia flava TL1.;"
phosphotransferase
PLM1_30_b1_sep16_scaffold_1006_7
Saccharothrix sp. ST-888, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4063..5115)
DNA (1053bp) protein (351aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI000381168B
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJK60047.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix sp. ST-888.;"
modC; putative molybdate ABC transporter ATP-binding protein
PLM1_30_b1_sep16_scaffold_1006_8
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(5129..5947)
DNA (819bp) protein (273aa)
molybdate ABC transporter permease Tax=Salinispora arenicola RepID=UPI0003602C41
molybdate ABC transporter inner membrane subunit
Molybdate ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ABV98568.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM1_30_b1_sep16_scaffold_1006_9
Streptomyces tsukubaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(5944..6729)
DNA (786bp) protein (262aa)
ABC transporter substrate-binding protein Tax=Streptomyces RepID=UPI00035D43DB
Molybdenum ABC transporter periplasmic molybdate-binding protein {ECO:0000313|EMBL:EIF89611.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces tsukubaensis NRRL18488.;"
Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA
PLM1_30_b1_sep16_scaffold_1006_10
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(6755..7162)
DNA (408bp) protein (136aa)
DNA binding domain protein, excisionase family Tax=Frankia sp. (strain EuI1c) RepID=E3IX86_FRASU
excisionase family DNA binding domain-containing protein
DNA binding domain protein, excisionase family {ECO:0000313|EMBL:ADP84986.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM1_30_b1_sep16_scaffold_1006_11
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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7310..8464
DNA (1155bp) protein (385aa)
Methyltransferase type 11 Tax=Frankia sp. CN3 RepID=G6HCY0_9ACTO
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ABW14590.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_30_b1_sep16_scaffold_1006_12
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8565..9944
DNA (1380bp) protein (460aa)
hypothetical protein Tax=Arthrobacter sp. TB 23 RepID=UPI0003787216
Uncharacterized protein {ECO:0000313|EMBL:KFF60740.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
GAF sensor hybrid histidine kinase
PLM1_30_b1_sep16_scaffold_1006_13
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10079..10939
DNA (861bp) protein (287aa)
Ketose-bisphosphate aldolase Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W196_9ACTO
ketose-bisphosphate aldolase
Ketose-bisphosphate aldolase {ECO:0000313|EMBL:AGZ42914.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_30_b1_sep16_scaffold_1006_14
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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10936..11439
DNA (504bp) protein (168aa)
Uncharacterized protein (Fragment) Tax=Leifsonia aquatica ATCC 14665 RepID=U2T4L2_LEIAQ
Haloacid dehalogenase {ECO:0000313|EMBL:KIF67551.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
HAD-superfamily hydrolase
PLM1_30_b1_sep16_scaffold_1006_15
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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11489..12145
DNA (657bp) protein (219aa)
Dihydroxyacetone kinase subunit L Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W4Q2_9ACTO
dihydroxyacetone kinase subunit L
Dihydroxyacetone kinase subunit L {ECO:0000313|EMBL:AGZ42916.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_30_b1_sep16_scaffold_1006_16
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12142..13137
DNA (996bp) protein (332aa)
dihydroxyacetone kinase subunit DhaK (EC:2.7.1.29)
dihydroxyacetone kinase Tax=Glaciibacter superstes RepID=UPI0003B4B9F6
Dihydroxyacetone kinase {ECO:0000313|EMBL:EYR62968.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
PLM1_30_b1_sep16_scaffold_1006_17
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(13184..13390)
DNA (207bp) protein (69aa)
Molybdenum-pterin-binding protein 3 Tax=Nitrolancetus hollandicus Lb RepID=I4EJV3_9CHLR
Molybdenum-pterin-binding protein 3 {ECO:0000313|EMBL:CCF84965.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
hypothetical protein
PLM1_30_b1_sep16_scaffold_1006_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13387..14025)
DNA (639bp) protein (213aa)
hypothetical protein Tax=Brachymonas chironomi RepID=UPI00037831CD
Variovorax paradoxus strain MEDvA23 contig_47, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ28792.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
PLM1_30_b1_sep16_scaffold_1006_19
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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comp(14210..15043)
DNA (834bp) protein (278aa)
HtrA2 peptidase (EC:3.4.21.108)
HtrA2 peptidase {ECO:0000313|EMBL:ADG88616.1}; EC=3.4.21.108 {ECO:0000313|EMBL:ADG88616.1};; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
HtrA2 peptidase Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6YBQ6_THEBD
Displaying 19 items

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