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PLM1_30_b1_sep16_scaffold_1058

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_30_b1_sep16_scaffold_1058_1
unknown

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2..145
DNA (144bp) protein (48aa)

This feature has no annotations

PLM1_30_b1_sep16_scaffold_1058_2
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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315..944
DNA (630bp) protein (210aa)
Putative regulator, ArsR family Tax=Modestobacter marinus (strain BC501) RepID=I4F2W6_MODMB
regulator, ArsR family
Putative regulator, ArsR family {ECO:0000313|EMBL:CCH89979.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM1_30_b1_sep16_scaffold_1058_3
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(908..1459)
DNA (552bp) protein (184aa)
Uncharacterized protein Tax=Nocardia brasiliensis ATCC 700358 RepID=K0EXW0_9NOCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU02307.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis ATCC 700358.;"
PLM1_30_b1_sep16_scaffold_1058_4
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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1509..2183
DNA (675bp) protein (225aa)
Regulatory protein TetR Tax=Frankia sp. CN3 RepID=G6H4N6_9ACTO
TetR family transcriptional regulator {ECO:0000313|EMBL:KHD76914.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
putative TetR-family transcriptional regulator
PLM1_30_b1_sep16_scaffold_1058_5
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(2170..2502)
DNA (333bp) protein (111aa)
Uncharacterized protein Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AW65_FRADG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH11392.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM1_30_b1_sep16_scaffold_1058_6
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(2530..3429)
DNA (900bp) protein (300aa)
HhH-GPD family protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CA17_SPHTD
HhH-GPD family protein
HhH-GPD family protein {ECO:0000313|EMBL:ACZ40660.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM1_30_b1_sep16_scaffold_1058_7
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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3447..6245
DNA (2799bp) protein (933aa)
(NiFe) hydrogenase maturation protein HypF Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ATK9_STRRD
HAD family hydrolase {ECO:0000313|EMBL:ETK34077.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
(NiFe) hydrogenase maturation protein HypF
PLM1_30_b1_sep16_scaffold_1058_8
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6751..7878)
DNA (1128bp) protein (376aa)
Hydrogenase isoenzymes formation protein HypD Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2YU50_9PSEU
Hydrogenase formation protein HypD {ECO:0000313|EMBL:ETK34087.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hydrogenase expression/formation protein HypD
PLM1_30_b1_sep16_scaffold_1058_9
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7895..8167)
DNA (273bp) protein (91aa)
Hydrogenase assembly chaperone HypC/HupF Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ATM2_STRRD
Hydrogenase expression/formation protein HypC {ECO:0000313|EMBL:EWM09739.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hydrogenase assembly chaperone HypC/HupF
PLM1_30_b1_sep16_scaffold_1058_10
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8145..8504)
DNA (360bp) protein (120aa)
Hydrogenase expression/synthesis HypA Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y5C6_THEBD
hydrogenase nickel incorporation protein HypA
Hydrogenase expression/synthesis HypA {ECO:0000313|EMBL:ADG89321.1}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM1_30_b1_sep16_scaffold_1058_11
unknown

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comp(8517..8627)
DNA (111bp) protein (37aa)

This feature has no annotations

PLM1_30_b1_sep16_scaffold_1058_12
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(8624..9142)
DNA (519bp) protein (173aa)
hupD1; hydrogenase maturation protein HupD (EC:3.-.-.-)
Hydrogenase maturation protein HupD Tax=Saccharopolyspora erythraea RepID=A4FE62_SACEN
Peptidase M52 {ECO:0000313|EMBL:EQD85167.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
PLM1_30_b1_sep16_scaffold_1058_13
Saccharothrix sp. ST-888, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9139..10608)
DNA (1470bp) protein (490aa)
hypothetical protein Tax=Streptomyces sp. CNS615 RepID=UPI0003680FFD
Uncharacterized protein {ECO:0000313|EMBL:KJK59360.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix sp. ST-888.;"
hypothetical protein
PLM1_30_b1_sep16_scaffold_1058_14
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10605..11246)
DNA (642bp) protein (214aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ATL7_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ86737.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_30_b1_sep16_scaffold_1058_15
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11243..11920)
DNA (678bp) protein (226aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ATL6_STRRD
Uncharacterized protein {ECO:0000313|EMBL:ETK34094.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hypothetical protein
PLM1_30_b1_sep16_scaffold_1058_16
Actinopolyspora erythraea, Actinopolyspora, Actinopolysporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11958..12797)
DNA (840bp) protein (280aa)
Fe-s cluster assembly nifu-like protein Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2YU42_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:KGI80691.1}; species="Bacteria; Actinobacteria; Actinopolysporales; Actinopolysporaceae; Actinopolyspora.;" source="Actinopolyspora erythraea.;"
fe-s cluster assembly protein nifu-like
PLM1_30_b1_sep16_scaffold_1058_17
Streptomyces sviceus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12807..13742)
DNA (936bp) protein (312aa)
Ni-dependent hydrogenase large subunit Tax=Streptomyces sviceus ATCC 29083 RepID=B5I1V9_9ACTO
Ni-dependent hydrogenase large subunit {ECO:0000313|EMBL:EDY59064.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sviceus ATCC 29083.;"
hydrogenase-1 large subunit
PLM1_30_b1_sep16_scaffold_1058_18
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14507..15154)
DNA (648bp) protein (216aa)
NADH ubiquinone oxidoreductase, 20 kDa subunit Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ATL3_STRRD
NADH ubiquinone oxidoreductase, 20 kDa subunit
NADH ubiquinone oxidoreductase, 20 kDa subunit {ECO:0000313|EMBL:ACZ86733.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_30_b1_sep16_scaffold_1058_19
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(15325..15993)
DNA (669bp) protein (223aa)
Phosphoheptose isomerase Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1HZL7_9PSEU
Phosphoheptose isomerase {ECO:0000313|EMBL:EOD63709.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
phosphoheptose isomerase
PLM1_30_b1_sep16_scaffold_1058_20
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15983..16210)
DNA (228bp) protein (76aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ATL1_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ86731.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_30_b1_sep16_scaffold_1058_21
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16207..16833)
DNA (627bp) protein (209aa)
phosphoheptose isomerase Tax=Saccharomonospora halophila RepID=UPI00035E233E
Phosphoheptose isomerase {ECO:0000313|EMBL:EHR49422.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
phosphoheptose isomerase
PLM1_30_b1_sep16_scaffold_1058_22
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17011..17565
DNA (555bp) protein (185aa)
XRE family transcriptional regulator Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2WU05_9PSEU
XRE family transcriptional regulator {ECO:0000313|EMBL:EME52246.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;"
XRE family transcriptional regulator
PLM1_30_b1_sep16_scaffold_1058_23
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(17683..18204)
DNA (522bp) protein (174aa)
Putative diguanylate cyclase/phosphodiesterase with PAS sensor Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W724_9ACTO
putative diguanylate cyclase/phosphodiesterase with PAS sensor
Putative diguanylate cyclase/phosphodiesterase with PAS sensor {ECO:0000313|EMBL:AGZ44998.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
Displaying 23 items

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