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PLM1_30_b1_sep16_scaffold_4429

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_30_b1_sep16_scaffold_4429_1
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..920)
DNA (918bp) protein (306aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2P5X4_9ACTO
formaldehyde dehydrogenase, glutathione-independent
Formaldehyde dehydrogenase, glutathione-independent {ECO:0000313|EMBL:ADB77514.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM1_30_b1_sep16_scaffold_4429_2
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(974..1765)
DNA (792bp) protein (264aa)
cobS; cobalamin synthase (EC:2.-.-.-)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Cobalamin synthase Tax=Ilumatobacter coccineus YM16-304 RepID=M5AJB9_9ACTN
PLM1_30_b1_sep16_scaffold_4429_3
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(1762..2775)
DNA (1014bp) protein (338aa)
cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00013344}; EC=2.4.2.21 {ECO:0000256|SAAS:SAAS00013328};; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZZ85_9ACTN
PLM1_30_b1_sep16_scaffold_4429_4
Thermus sp. NMX2.A1, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(2768..2977)
DNA (210bp) protein (70aa)
Cobyric acid synthase Tax=Thermus thermophilus (strain SG0.5JP17-16) RepID=F6DJR6_THETG
cobyric acid synthase/cobinamide kinase
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus sp. NMX2.A1.;"
PLM1_30_b1_sep16_scaffold_4429_5
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(3064..3891)
DNA (828bp) protein (276aa)
cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
Cob(I)yrinic acid a,c-diamide adenosyltransferase {ECO:0000313|EMBL:BAN01473.1}; EC=2.5.1.17 {ECO:0000313|EMBL:BAN01473.1};; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Cob(I)yrinic acid a,c-diamide adenosyltransferase Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZXS8_9ACTN
PLM1_30_b1_sep16_scaffold_4429_6
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3888..4682)
DNA (795bp) protein (265aa)
ABC transporter related Tax=Micromonospora sp. ATCC 39149 RepID=C4RKN6_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHI00389.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM1_30_b1_sep16_scaffold_4429_7
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(4679..5689)
DNA (1011bp) protein (337aa)
ABC transporter permease Tax=Dietzia sp. UCD-THP RepID=UPI00036E4F05
ABC transporter permease
Tax=RBG_16_Actinobacteria_70_17_curated
PLM1_30_b1_sep16_scaffold_4429_8
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(5686..6555)
DNA (870bp) protein (290aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI000372C14F
Vitamin B12 ABC transporter, B12-binding component BtuF {ECO:0000313|EMBL:EWC63631.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
vitamin B12-binding protein
PLM1_30_b1_sep16_scaffold_4429_9
unknown

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comp(6872..7165)
DNA (294bp) protein (98aa)

This feature has no annotations

PLM1_30_b1_sep16_scaffold_4429_10
Eimeria mitis, Eimeria, Eucoccidiorida, Coccidia, Apicomplexa, Eukaryota

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comp(7273..7647)
DNA (375bp) protein (125aa)
Uncharacterized protein Tax=Eimeria mitis RepID=U6KF78_9EIME
Uncharacterized protein {ECO:0000313|EMBL:CDJ35431.1}; species="Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Eimeriidae; Eimeria.;" source="Eimeria mitis.;"
PLM1_30_b1_sep16_scaffold_4429_11
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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8037..8294
DNA (258bp) protein (86aa)
Uncharacterized protein Tax=Nitrolancetus hollandicus Lb RepID=I4EDG3_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF82725.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
hypothetical protein
PLM1_30_b1_sep16_scaffold_4429_12
unknown

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comp(8297..8437)
DNA (141bp) protein (47aa)

This feature has no annotations

PLM1_30_b1_sep16_scaffold_4429_13
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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8554..9495
DNA (942bp) protein (314aa)
permease Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0003776644
putative permease, DMT superfamily
Putative permease, DMT superfamily {ECO:0000313|EMBL:AIJ22578.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM1_30_b1_sep16_scaffold_4429_14
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

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comp(9492..10130)
DNA (639bp) protein (213aa)
Lysine exporter (LYSE/YGGA) Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G5R1_9GAMM
hypothetical protein
Chemotaxis protein {ECO:0000313|EMBL:KIY13294.1}; species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
PLM1_30_b1_sep16_scaffold_4429_15
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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10202..11932
DNA (1731bp) protein (577aa)
2-oxo-acid dehydrogenase E1 subunit, homodimeric type (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
Pyruvate dehydrogenase E1 component Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B294_FRADG
Displaying 15 items

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