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PLM2_5_b1_sep16_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_52_1
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

1..1362
DNA (1362bp) protein (454aa)
Uncharacterized protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MH25_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY47810.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
PLM2_5_b1_sep16_scaffold_52_2
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(1367..2581)
DNA (1215bp) protein (405aa)
ATP-dependent RNA helicase RhlE Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SXJ0_JANMA
rhlE; ATP-dependent RNA helicase
Tax=RBG_16_Acidobacteria_68_9_curated
PLM2_5_b1_sep16_scaffold_52_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(2899..6273)
DNA (3375bp) protein (1125aa)
TolB protein Tax=Fulvivirga imtechensis AK7 RepID=L8JQR2_9BACT
WD40-like beta Propeller containing protein {ECO:0000313|EMBL:AHG93481.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
WD40-like beta Propeller containing protein
PLM2_5_b1_sep16_scaffold_52_4
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6453..7130)
DNA (678bp) protein (226aa)
Transcriptional regulator, XRE family Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WL9_SOLUE
XRE family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM2_5_b1_sep16_scaffold_52_5
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(7215..7841)
DNA (627bp) protein (209aa)
Uncharacterized protein Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CV51_TRURR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI15878.1}; Flags: Precursor;; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
PLM2_5_b1_sep16_scaffold_52_6
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7838..8071)
DNA (234bp) protein (78aa)
GIY-YIG catalytic domain-containing protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8N151_CORCM
yhbQ; GIY-YIG catalytic domain-containing protein
GIY-YIG catalytic domain-containing protein {ECO:0000313|EMBL:AFE10975.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM2_5_b1_sep16_scaffold_52_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

8127..9419
DNA (1293bp) protein (431aa)
Major facilitator superfamily MFS_1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJR7_RHOM4
major facilitator superfamily protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_52_8

Not on your lists

comp(9394..9819)
DNA (426bp) protein (142aa)
Peroxiredoxin, OsmC subfamily Tax=Desulfococcus multivorans DSM 2059 RepID=S7TZK9_DESML
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49273.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
OsmC subfamily peroxiredoxin
PLM2_5_b1_sep16_scaffold_52_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

9925..10383
DNA (459bp) protein (153aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Glyoxalase-like domain protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM2_5_b1_sep16_scaffold_52_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

10380..12284
DNA (1905bp) protein (635aa)
Glucose-methanol-choline oxidoreductase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FFJ6_CONWI
glucose-methanol-choline oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM2_5_b1_sep16_scaffold_52_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12297..14174
DNA (1878bp) protein (626aa)
Peptidase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SIK6_RHOMR
peptidase
Peptidase {ECO:0000313|EMBL:AHG89716.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_52_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(14301..15737)
DNA (1437bp) protein (479aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036BB1D9
Sodium/proton antiporter, CPA1 family (TC 2.A.36) {ECO:0000313|EMBL:CDM66984.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_52_13
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(15737..17143)
DNA (1407bp) protein (469aa)
NAD(P) transhydrogenase, beta subunit; K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Armatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
NAD(P) transhydrogenase subunit beta
Tax=RBG_16_Zixibacteria_53_22_curated
PLM2_5_b1_sep16_scaffold_52_14
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(17143..17424)
DNA (282bp) protein (94aa)
Nicotinamide nucleotide transhydrogenase, subunit alpha bin=GWA2_Ignavibacteria_55_11 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
nicotinamide nucleotide transhydrogenase subunit alpha
Tax=RBG_16_Zixibacteria_53_22_curated
PLM2_5_b1_sep16_scaffold_52_15
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

comp(17421..18524)
DNA (1104bp) protein (368aa)
NAD(P) transhydrogenase subunit alpha Tax=uncultured candidate division OP1 bacterium RepID=H5ST64_9BACT
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:BAL59350.1}; species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
NAD/NADP transhydrogenase subunit alpha
PLM2_5_b1_sep16_scaffold_52_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18538..18960)
DNA (423bp) protein (141aa)
TM2 domain protein Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WPQ1_9ACTO
TM2 domain containing protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_52_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(18969..19880)
DNA (912bp) protein (304aa)
Cell division inhibitor Tax=Cystobacter fuscus DSM 2262 RepID=L9JQJ3_9DELT bin=16ft_combo_ws3_JS1 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM2_5_b1_sep16_scaffold_52_18
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(19888..20277)
DNA (390bp) protein (130aa)
Endoribonuclease L-PSP Tax=Gloeobacter kilaueensis JS1 RepID=U5QNE8_9CYAN
endoribonuclease L-PSP
Tax=RBG_16_Armatimonadetes_67_12_curated
PLM2_5_b1_sep16_scaffold_52_19
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(20274..20843)
DNA (570bp) protein (190aa)
Diguanylate cyclase Tax=Cyanothece sp. (strain PCC 7424) RepID=B7KCT6_CYAP7
diguanylate cyclase
Tax=RBG_16_Chloroflexi_63_12_curated
PLM2_5_b1_sep16_scaffold_52_20
Nostoc sp. PCC 7120, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(20860..21303)
DNA (444bp) protein (148aa)
hypothetical protein Tax=Prochlorothrix hollandica RepID=UPI00034C6F4F
hypothetical protein
Alr0761 protein {ECO:0000313|EMBL:BAB72718.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain PCC 7120 / UTEX 2576).;"
PLM2_5_b1_sep16_scaffold_52_21
unknown

Not on your lists

comp(21300..22487)
DNA (1188bp) protein (396aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_52_22
unknown

Not on your lists

comp(22475..23491)
DNA (1017bp) protein (339aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_52_23
unknown

Not on your lists

comp(23556..24221)
DNA (666bp) protein (222aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_52_24
RBG_16_Armatimonadetes_58_9_curated, Armatimonadetes, Bacteria

Not on your lists

comp(24218..25129)
DNA (912bp) protein (304aa)
ABC transporter ATP-binding protein Tax=Schlesneria paludicola RepID=UPI00029B27EB
ABC transporter-like protein
Tax=RBG_16_Armatimonadetes_58_9_curated
PLM2_5_b1_sep16_scaffold_52_25
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(25126..25506)
DNA (381bp) protein (127aa)
HTH-type transcriptional repressor YtrA Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LIS1_THEPS
ytrA; HTH-type transcriptional repressor YtrA
Tax=RBG_16_Chloroflexi_48_8_curated
PLM2_5_b1_sep16_scaffold_52_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

25578..26075
DNA (498bp) protein (166aa)
DinB family protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
DinB family protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_52_27
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26132..27178
DNA (1047bp) protein (349aa)
Methylated-DNA--protein-cysteine methyltransferase Tax=Oceanibaculum indicum P24 RepID=K2J9K6_9PROT
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000313|EMBL:EKE71512.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
methylated-DNA/protein-cysteine methyltransferase
PLM2_5_b1_sep16_scaffold_52_28
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(27303..29924)
DNA (2622bp) protein (874aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6I5_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM2_5_b1_sep16_scaffold_52_29
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(29921..32347)
DNA (2427bp) protein (809aa)
Antirepressor regulating drug resistance protein Tax=Singulisphaera acidiphila RepID=L0DNH4_SINAD
peptidase M56 BlaR1
Peptidase M56 BlaR1 {ECO:0000313|EMBL:AHG88998.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_52_30
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(32349..32738)
DNA (390bp) protein (130aa)
Putative transcriptional regulator Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNX5_SINAD
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGA30366.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying items 1-30 of 54 in total

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