ggKbase home page

PLM2_5_b1_sep16_scaffold_2227

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_2227_1

Not on your lists

comp(3..578)
DNA (576bp) protein (192aa)
hypothetical protein Tax=Balneola vulgaris RepID=UPI00035CF077
Uncharacterized protein {ECO:0000313|EMBL:KKO12558.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_2227_2
unknown

Not on your lists

comp(1125..1862)
DNA (738bp) protein (246aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_2227_3
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1987..2535
DNA (549bp) protein (183aa)
polyketide cyclase Tax=Verrucomicrobium spinosum RepID=UPI0001744BD4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKF83527.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
PLM2_5_b1_sep16_scaffold_2227_4
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2563..2925
DNA (363bp) protein (121aa)
DoxX family protein bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DoxX family protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM2_5_b1_sep16_scaffold_2227_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

3042..4502
DNA (1461bp) protein (487aa)
MATE efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:AHG91656.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
MatE family protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PLM2_5_b1_sep16_scaffold_2227_6
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(4566..5258)
DNA (693bp) protein (231aa)
Putative uncharacterized protein Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UR43_PSEUP
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM2_5_b1_sep16_scaffold_2227_7
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5509..5970)
DNA (462bp) protein (154aa)
Putative NTP pyrophosphohydrolase Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVZ6_SOLCM
putative NTP pyrophosphohydrolase
Putative NTP pyrophosphohydrolase {ECO:0000313|EMBL:AFD06899.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
PLM2_5_b1_sep16_scaffold_2227_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(5967..7163)
DNA (1197bp) protein (399aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DNA polymerase III subunit beta (EC:2.7.7.7)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037C374A
PLM2_5_b1_sep16_scaffold_2227_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(7643..8977)
DNA (1335bp) protein (445aa)
Chromosomal replication initiator protein DnaA Tax=uncultured Acidobacteria bacterium RepID=H5SEP2_9BACT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
chromosomal replication initiator protein DnaA
PLM2_5_b1_sep16_scaffold_2227_10
Anabaena sp., Anabaena, Nostocales, Cyanobacteria, Bacteria

Not on your lists

9498..9923
DNA (426bp) protein (142aa)
Sugar-non-specific nuclease inhibitor Tax=Nostocaceae RepID=Q7A260_NOSS1
nuiA; sugar-non-specific nuclease inhibitor
Nuclease inhibitor {ECO:0000313|EMBL:CAA54677.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena sp.;"
PLM2_5_b1_sep16_scaffold_2227_11
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(9926..10627)
DNA (702bp) protein (234aa)
Uncharacterized protein Tax=Melioribacter roseus (strain P3M) RepID=I6ZUL8_MELRP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFN75709.1}; species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
PLM2_5_b1_sep16_scaffold_2227_12
unknown

Not on your lists

comp(10765..11013)
DNA (249bp) protein (83aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_2227_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(11241..12845)
DNA (1605bp) protein (535aa)
Putative uncharacterized protein Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6YZY2_DESAT
Uncharacterized protein {ECO:0000313|EMBL:CDM67038.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_2227_14
unknown

Not on your lists

comp(12859..13077)
DNA (219bp) protein (73aa)

This feature has no annotations

Displaying 14 items

View Taxonomy