ggKbase home page

PLM2_5_b1_sep16_scaffold_889

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_889_1
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2..691)
DNA (690bp) protein (230aa)
Uncharacterized protein Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QHV6_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB39905.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
PLM2_5_b1_sep16_scaffold_889_2
Bdellovibrio sp. ArHS, Bdellovibrio, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(699..1652)
DNA (954bp) protein (318aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
transmembrane protein (fibronectin III domain and GP5 C-terminal repeat)
Uncharacterized protein {ECO:0000313|EMBL:KHD87385.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio.;" source="Bdellovibrio sp. ArHS.;"
PLM2_5_b1_sep16_scaffold_889_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1773..2729)
DNA (957bp) protein (319aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQD3_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02147.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM2_5_b1_sep16_scaffold_889_4
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2782..3681)
DNA (900bp) protein (300aa)
Uncharacterized protein Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EV11_EMTOG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK03514.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
PLM2_5_b1_sep16_scaffold_889_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3808..4701
DNA (894bp) protein (298aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00036FF533
molecular chaperone DnaJ
Molecular chaperone DnaJ {ECO:0000313|EMBL:AHF16971.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PLM2_5_b1_sep16_scaffold_889_6
Polaribacter sp. Hel1_85, Polaribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4703..5005
DNA (303bp) protein (101aa)
Uncharacterized protein Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FHC5_FLAJ1
Transcriptional regulator, MerR family {ECO:0000313|EMBL:KGL62488.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Polaribacter.;" source="Polaribacter sp. Hel1_85.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_889_7
unknown

Not on your lists

5121..5669
DNA (549bp) protein (183aa)
Putative cyclase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF78_9BACT bin=RAAC39 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=RAAC39 organism_group=Ignavibacteria
PLM2_5_b1_sep16_scaffold_889_8
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5765..8359)
DNA (2595bp) protein (865aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THQ6_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC94743.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_889_9
unknown

Not on your lists

comp(9023..9874)
DNA (852bp) protein (284aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_889_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10014..10430)
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBD8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03438.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM2_5_b1_sep16_scaffold_889_11
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10450..12207)
DNA (1758bp) protein (586aa)
SMP-30/Gluconolaconase/LRE-like region-containing protein Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L0W6_HALH1
SMP-30/gluconolaconase/LRE-like region-containing protein
SMP-30/Gluconolaconase/LRE-like region-containing protein {ECO:0000313|EMBL:AEE50570.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
PLM2_5_b1_sep16_scaffold_889_12
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12227..13627)
DNA (1401bp) protein (467aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
NADH-quinone oxidoreductase subunit N Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBD7_NIAKG
NADH dehydrogenase subunit N
PLM2_5_b1_sep16_scaffold_889_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13634..15133)
DNA (1500bp) protein (500aa)
NADH dehydrogenase subunit M {ECO:0000313|EMBL:AEW03436.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AEW03436.1};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
NADH dehydrogenase subunit M Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBD6_NIAKG
NADH dehydrogenase subunit M
PLM2_5_b1_sep16_scaffold_889_14
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(15141..17066)
DNA (1926bp) protein (642aa)
NADH dehydrogenase subunit L Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBD5_NIAKG
NADH dehydrogenase subunit L
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
PLM2_5_b1_sep16_scaffold_889_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17156..17473)
DNA (318bp) protein (106aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
NADH-quinone oxidoreductase subunit K Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBD4_NIAKG
NAD(P)H-quinone oxidoreductase subunit 4L
PLM2_5_b1_sep16_scaffold_889_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17470..18087)
DNA (618bp) protein (206aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBD3_NIAKG
NADH-ubiquinone/plastoquinone oxidoreductase chain 6
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 {ECO:0000313|EMBL:AEW03433.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM2_5_b1_sep16_scaffold_889_17
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18087..18563)
DNA (477bp) protein (159aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBD2_NIAKG
NADH dehydrogenase {ECO:0000313|EMBL:KIC90069.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
4Fe-4S ferredoxin
PLM2_5_b1_sep16_scaffold_889_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19121..19327)
DNA (207bp) protein (69aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
NADH-quinone oxidoreductase subunit H Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBD1_NIAKG
NADH dehydrogenase subunit H
Displaying 18 items

View Taxonomy