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PLM2_5_b1_sep16_scaffold_300

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_300_1
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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1..360
DNA (360bp) protein (120aa)
Putative uncharacterized protein Tax=Micromonospora sp. ATCC 39149 RepID=C4RLH0_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EEP70879.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_300_2
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(430..3564)
DNA (3135bp) protein (1045aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI000366308B
isoleucyl-tRNA synthetase
PLM2_5_b1_sep16_scaffold_300_3
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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3881..5467
DNA (1587bp) protein (529aa)
Potassium/proton antiporter Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VXB5_9ACTO
potassium/proton antiporter
Potassium/proton antiporter {ECO:0000313|EMBL:AGZ40301.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM2_5_b1_sep16_scaffold_300_4
Streptomyces avermitilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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5659..6354
DNA (696bp) protein (232aa)
Putative DNA-binding protein Tax=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) RepID=Q82AC8_STRAW
DNA-binding protein
Putative DNA-binding protein {ECO:0000313|EMBL:BAC73842.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /; NCIMB 12804 / NRRL 8165 / MA-4680).;"
PLM2_5_b1_sep16_scaffold_300_5
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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6386..7198
DNA (813bp) protein (271aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
Lipoprotein signal peptidase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SA39_GEOOG
lipoprotein signal peptidase
PLM2_5_b1_sep16_scaffold_300_6
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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7137..8114
DNA (978bp) protein (326aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
RNA pseudouridine synthase Tax=Streptomyces RepID=UPI00036183FC
RluA family pseudouridine synthase
PLM2_5_b1_sep16_scaffold_300_7
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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8137..8934
DNA (798bp) protein (266aa)
Abortive infection protein Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SA37_GEOOG
abortive infection protein
Abortive infection protein {ECO:0000313|EMBL:ADB75852.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM2_5_b1_sep16_scaffold_300_8
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(8879..9811)
DNA (933bp) protein (311aa)
AraC-type DNA-binding domain-containing protein-like protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BEC2_STRRD
AraC family transcriptional regulator
AraC-type DNA-binding domain-containing protein-like protein {ECO:0000313|EMBL:ACZ91959.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM2_5_b1_sep16_scaffold_300_9
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9886..10701
DNA (816bp) protein (272aa)
hypothetical protein Tax=Nocardiopsis xinjiangensis RepID=UPI00036F2E18
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ91960.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM2_5_b1_sep16_scaffold_300_10
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10731..11231
DNA (501bp) protein (167aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0L5P8_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH19145.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_300_11
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11434..14094
DNA (2661bp) protein (887aa)
Uncharacterized protein Tax=Modestobacter marinus (strain BC501) RepID=I4ESD7_MODMB
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:CCH86300.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM2_5_b1_sep16_scaffold_300_12
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14114..14902)
DNA (789bp) protein (263aa)
DNA polymerase subunit beta Tax=Nocardiopsis RepID=UPI00034DD49A
Uncharacterized protein {ECO:0000313|EMBL:ETK34364.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_300_13
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14991..18470
DNA (3480bp) protein (1160aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI00037BD2D8
PLM2_5_b1_sep16_scaffold_300_14
unknown

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18504..19415
DNA (912bp) protein (304aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_300_15
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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19496..20710
DNA (1215bp) protein (405aa)
amidohydrolase Tax=Frankia sp. Iso899 RepID=UPI0003B31C91
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AEH10358.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM2_5_b1_sep16_scaffold_300_16
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20707..21420
DNA (714bp) protein (238aa)
Uncharacterized protein Tax=Modestobacter marinus (strain BC501) RepID=I4EZN4_MODMB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH88847.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM2_5_b1_sep16_scaffold_300_17
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(21401..22090)
DNA (690bp) protein (230aa)
peptidase S16 Tax=Salinispora arenicola RepID=UPI000370C9C5
peptidase S16 lon domain-containing protein
Peptidase S16 lon domain protein {ECO:0000313|EMBL:ABV99225.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM2_5_b1_sep16_scaffold_300_18
Streptomyces auratus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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22140..23444
DNA (1305bp) protein (435aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces auratus AGR0001.;"
hisD; histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase Tax=Streptomyces auratus AGR0001 RepID=J2JWK6_9ACTO
PLM2_5_b1_sep16_scaffold_300_19
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23441..24532
DNA (1092bp) protein (364aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
Histidinol-phosphate aminotransferase Tax=Micromonospora RepID=D9T662_MICAI
histidinol-phosphate aminotransferase
PLM2_5_b1_sep16_scaffold_300_20
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24529..25122
DNA (594bp) protein (198aa)
Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
Imidazoleglycerol-phosphate dehydratase Tax=Actinomadura madurae LIID-AJ290 RepID=U2N2X0_9ACTO
PLM2_5_b1_sep16_scaffold_300_21
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25163..25861
DNA (699bp) protein (233aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
Imidazole glycerol phosphate synthase subunit HisH Tax=Frankia sp. CN3 RepID=G6HN32_9ACTO
imidazole glycerol phosphate synthase subunit hisH
PLM2_5_b1_sep16_scaffold_300_22
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25858..26190
DNA (333bp) protein (111aa)
Uncharacterized protein {ECO:0000313|EMBL:ETK36458.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
PLM2_5_b1_sep16_scaffold_300_23
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26187..26996
DNA (810bp) protein (270aa)
phosphoribosyl isomerase A (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Tax=Salinispora pacifica RepID=UPI00037D9A69
PLM2_5_b1_sep16_scaffold_300_24
Frankia sp. CcI6, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26993..27757
DNA (765bp) protein (255aa)
imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CcI6.;"
Imidazole glycerol phosphate synthase subunit HisF Tax=Frankia sp. (strain CcI3) RepID=HIS6_FRASC
Displaying 24 items

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