ggKbase home page

PLM2_5_b1_sep16_scaffold_156

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_156_1
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(2..364)
DNA (363bp) protein (121aa)
Tax=RBG_16_Actinobacteria_67_10_curated
PLM2_5_b1_sep16_scaffold_156_2
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(801..1817)
DNA (1017bp) protein (339aa)
DNA topoisomerase Tax=Streptomyces viridosporus RepID=UPI000365E53A
DNA topoisomerase I {ECO:0000313|EMBL:KFI08122.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;"
type I topoisomerase
PLM2_5_b1_sep16_scaffold_156_3
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

1868..2929
DNA (1062bp) protein (354aa)
isocitrate dehydrogenase Tax=Alicyclobacillus pohliae RepID=UPI0003826913
isocitrate/isopropylmalate dehydrogenase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_156_4
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2922..3488)
DNA (567bp) protein (189aa)
Two-component response regulator variant Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67KX1_SYMTH
two-component response regulator variant
Two-component response regulator variant {ECO:0000313|EMBL:BAD41675.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
PLM2_5_b1_sep16_scaffold_156_5
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(3533..4360)
DNA (828bp) protein (276aa)
hypothetical protein Tax=Arthrobacter sp. 131MFCol6.1 RepID=UPI00036FD88D
acid phosphatase
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM2_5_b1_sep16_scaffold_156_6
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(4428..4940)
DNA (513bp) protein (171aa)
Acetyltransferase Tax=Thermoplasmatales archaeon A-plasma RepID=T0LS41_9EURY
WecD2; histone acetyltransferase HPA2-like acetyltransferase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_156_7
Geitlerinema sp. PCC 7407, Geitlerinema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(4937..6487)
DNA (1551bp) protein (517aa)
gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase {ECO:0000313|EMBL:AFY68172.1}; EC=2.3.2.2 {ECO:0000313|EMBL:AFY68172.1};; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Geitlerinema.;" source="Geitlerinema sp. PCC 7407.;"
Gamma-glutamyltransferase Tax=Geitlerinema sp. PCC 7407 RepID=K9SC15_9CYAN
PLM2_5_b1_sep16_scaffold_156_8
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

6537..8147
DNA (1611bp) protein (537aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FAF7_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB49226.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_156_9
R_SM2F11_50_11, SM2F11, Bacteria

Not on your lists

8179..8658
DNA (480bp) protein (160aa)
RNA polymerase sigma-70 factor Tax=Brevibacillus brevis RepID=UPI00034DAAC9
FecI-like sigma-24 factor
Tax=RIFCSPHIGHO2_01_FULL_SM2F11_50_11_curated
PLM2_5_b1_sep16_scaffold_156_10
unknown

Not on your lists

8655..10010
DNA (1356bp) protein (452aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_156_11
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(10007..11392)
DNA (1386bp) protein (462aa)
Cell division protein FtsZ Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F9Y5_CONWI
cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM2_5_b1_sep16_scaffold_156_12
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(11364..12200)
DNA (837bp) protein (279aa)
Cobyrinic acid ac-diamide synthase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F9Y6_CONWI
cobyrinic acid ac-diamide synthase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_156_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(12321..12629)
DNA (309bp) protein (103aa)
branched-chain amino acid transport Tax=Streptomyces somaliensis RepID=UPI00029AD3C2
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_156_14
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(12626..13303)
DNA (678bp) protein (226aa)
AzlC family protein Tax=Streptomyces somaliensis RepID=UPI00029ADBCA
AzlC family protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_156_15
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(13331..13543)
DNA (213bp) protein (71aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_156_16
unknown

Not on your lists

13559..14368
DNA (810bp) protein (270aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_156_17
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(14365..15606)
DNA (1242bp) protein (414aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_156_18
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(15616..16125)
DNA (510bp) protein (170aa)
Histidine triad (HIT) protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TIJ6_9CHLR
Histidine triad (HIT) protein {ECO:0000313|EMBL:EFH89253.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
HIT family hydrolase, diadenosine tetraphosphate hydrolase
PLM2_5_b1_sep16_scaffold_156_19
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(16122..16862)
DNA (741bp) protein (247aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
DNA-(Apurinic or apyrimidinic site) lyase {ECO:0000313|EMBL:ADB54205.1}; EC=4.2.99.18 {ECO:0000313|EMBL:ADB54205.1};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
DNA-(Apurinic or apyrimidinic site) lyase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2S4_CONWI
PLM2_5_b1_sep16_scaffold_156_20
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16941..18551)
DNA (1611bp) protein (537aa)
hypothetical protein Tax=Frankia sp. Iso899 RepID=UPI0003B398B9
Uncharacterized protein {ECO:0000313|EMBL:EWT01151.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
PLM2_5_b1_sep16_scaffold_156_21
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(18629..22843)
DNA (4215bp) protein (1405aa)
DEAD/H associated domain protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2R2_CONWI
DEAD/H associated domain protein {ECO:0000313|EMBL:ADB54193.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
DEAD/DEAH box helicase
PLM2_5_b1_sep16_scaffold_156_22
Streptomyces sp. F2, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22858..23271)
DNA (414bp) protein (138aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000381F847
Histidine triad (HIT) protein {ECO:0000313|EMBL:AHE39526.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. F2.;"
Histidine triad (HIT) protein
PLM2_5_b1_sep16_scaffold_156_23
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23352..23918
DNA (567bp) protein (189aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003772AB3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP57013.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
PLM2_5_b1_sep16_scaffold_156_24
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

23915..24442
DNA (528bp) protein (176aa)
hypothetical protein Tax=Actinoalloteichus spitiensis RepID=UPI00036F4CA5
Adenylate kinase-like kinase {ECO:0000313|EMBL:EKV01229.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_156_25
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

24453..25019
DNA (567bp) protein (189aa)
Uncharacterized protein Tax=Patulibacter medicamentivorans RepID=H0E5X5_9ACTN
HhH-GPD family protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM2_5_b1_sep16_scaffold_156_26
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

25156..26073
DNA (918bp) protein (306aa)
Uncharacterized protein Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U9A6_OCEP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADR36935.1}; Flags: Precursor;; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus.;" source="Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 /; 506).;"
PLM2_5_b1_sep16_scaffold_156_27
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26161..26802)
DNA (642bp) protein (214aa)
Putative uncharacterized protein Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QDW5_CATAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU76553.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM2_5_b1_sep16_scaffold_156_28
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26786..28207)
DNA (1422bp) protein (474aa)
FAD dependent oxidoreductase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ATD4_RUBXD
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABG05344.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM2_5_b1_sep16_scaffold_156_29

Not on your lists

comp(28219..29136)
DNA (918bp) protein (306aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WD4_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:AHN97877.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac127.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_156_30
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29129..29902)
DNA (774bp) protein (258aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI0003647718
methyltransferase type 11
Methyltransferase type 11 {ECO:0000313|EMBL:AIJ26652.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
Displaying items 1-30 of 37 in total

View Taxonomy