ggKbase home page

PLM2_30_b1_sep16_scaffold_5771

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_b1_sep16_scaffold_5771_1
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(2..1108)
DNA (1107bp) protein (369aa)
Macrolide transporter ATP-binding /permease protein Tax=Gloeobacter kilaueensis JS1 RepID=U5QSA7_9CYAN
macrolide transporter ATP-binding/permease protein
Macrolide transporter ATP-binding /permease protein {ECO:0000313|EMBL:AGY60600.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
PLM2_30_b1_sep16_scaffold_5771_2
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(1117..3291)
DNA (2175bp) protein (725aa)
Gll1201 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NLC5_GLOVI
hypothetical protein
Gll1201 protein {ECO:0000313|EMBL:BAC89142.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
PLM2_30_b1_sep16_scaffold_5771_3

Not on your lists

comp(3264..3500)
DNA (237bp) protein (79aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000373F883
MacB-like periplasmic core domain protein {ECO:0000313|EMBL:AIA16778.1}; Flags: Fragment;; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_5771_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(3536..4252)
DNA (717bp) protein (239aa)
ABC transporter Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037C73BE
ABC transporter-like protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM2_30_b1_sep16_scaffold_5771_5
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(4267..5592)
DNA (1326bp) protein (442aa)
Efflux transporter, RND family, MFP subunit Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXY2_OPITP
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACB75184.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM2_30_b1_sep16_scaffold_5771_6
unknown

Not on your lists

comp(5601..5873)
DNA (273bp) protein (91aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_5771_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(6074..7408)
DNA (1335bp) protein (445aa)
Multi-sensor signal transduction histidine kinase Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXY3_OPITP
multi-sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM2_30_b1_sep16_scaffold_5771_8
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(7448..8794)
DNA (1347bp) protein (449aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXY5_OPITP
two component, sigma54 specific, Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM2_30_b1_sep16_scaffold_5771_9
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(8808..10016)
DNA (1209bp) protein (403aa)
Ferritin-like domain fused to DUF125 family domain Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3E0V5_METI4
Ferritin-like domain fused to DUF125 family domain
Ferritin-like domain fused to DUF125 family domain {ECO:0000313|EMBL:ACD84432.1}; species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
PLM2_30_b1_sep16_scaffold_5771_10
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10022..10972)
DNA (951bp) protein (317aa)
hypothetical protein GobsU_12882 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DDE bin=16ft_combo_ws3_JS1 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIZ62520.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
PLM2_30_b1_sep16_scaffold_5771_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(11192..11452)
DNA (261bp) protein (87aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037924B3
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM2_30_b1_sep16_scaffold_5771_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(11465..12061)
DNA (597bp) protein (199aa)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EDY16994.1}; EC=1.1.1.95 {ECO:0000313|EMBL:EDY16994.1};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
D-3-phosphoglycerate dehydrogenase Tax=Chthoniobacter flavus Ellin428 RepID=B4D991_9BACT
D-3-phosphoglycerate dehydrogenase
Displaying 12 items

View Taxonomy