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PLM2_30_b1_sep16_scaffold_299

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_b1_sep16_scaffold_299_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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2..844
DNA (843bp) protein (281aa)
50S ribosomal protein L5 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUY6_9BACT
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
rplE; 50S ribosomal protein L5
PLM2_30_b1_sep16_scaffold_299_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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850..1248
DNA (399bp) protein (133aa)
30S ribosomal protein S8 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUY7_9BACT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
30S ribosomal protein S8
PLM2_30_b1_sep16_scaffold_299_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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1253..1792
DNA (540bp) protein (180aa)
50S ribosomal protein L6 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUY8_9BACT
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
rplF; 50S ribosomal protein L6
PLM2_30_b1_sep16_scaffold_299_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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1746..2156
DNA (411bp) protein (137aa)
50S ribosomal protein L18 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUY9_9BACT
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
50S ribosomal protein L18
PLM2_30_b1_sep16_scaffold_299_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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2160..2726
DNA (567bp) protein (189aa)
30S ribosomal protein S5 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUZ0_9BACT
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
30S ribosomal protein S5
PLM2_30_b1_sep16_scaffold_299_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


2713..3321
DNA (609bp) protein (203aa)
50S ribosomal protein L15 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUZ1_9BACT
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
rplO; 50S ribosomal protein L15
PLM2_30_b1_sep16_scaffold_299_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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3354..4862
DNA (1509bp) protein (503aa)
Protein translocase subunit SecY Tax=Chthoniobacter flavus Ellin428 RepID=B4CUZ2_9BACT
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
secY; preprotein translocase subunit SecY
PLM2_30_b1_sep16_scaffold_299_8
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4878..5522
DNA (645bp) protein (215aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
adenylate kinase Tax=Thermodesulfatator atlanticus RepID=UPI0003B55657
adenylate kinase
PLM2_30_b1_sep16_scaffold_299_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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5519..6295
DNA (777bp) protein (259aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Methionine aminopeptidase Tax=Chthoniobacter flavus Ellin428 RepID=B4CUZ3_9BACT
map; methionine aminopeptidase
PLM2_30_b1_sep16_scaffold_299_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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6268..6486
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUZ4_9BACT
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
translation initiation factor IF-1
PLM2_30_b1_sep16_scaffold_299_11
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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6665..7060
DNA (396bp) protein (132aa)
30S ribosomal protein S13 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUZ5_9BACT
rpsM; 30S ribosomal protein S13
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM2_30_b1_sep16_scaffold_299_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


7143..7682
DNA (540bp) protein (180aa)
30S ribosomal protein S11 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUZ6_9BACT
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
30S ribosomal protein S11
PLM2_30_b1_sep16_scaffold_299_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


7721..8332
DNA (612bp) protein (204aa)
30S ribosomal protein S4 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUZ7_9BACT
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
30S ribosomal protein S4
PLM2_30_b1_sep16_scaffold_299_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(8369..8605)
DNA (237bp) protein (79aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D097_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20411.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM2_30_b1_sep16_scaffold_299_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(8625..9011)
DNA (387bp) protein (129aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D098_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20412.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM2_30_b1_sep16_scaffold_299_16
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9078..9509
DNA (432bp) protein (144aa)
Putative uncharacterized protein Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q431_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX46740.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
PLM2_30_b1_sep16_scaffold_299_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(9528..10130)
DNA (603bp) protein (201aa)
RNA polymerase sigma factor Tax=Chthoniobacter flavus Ellin428 RepID=B4CWR9_9BACT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ECF subfamily RNA polymerase sigma-24 subunit
PLM2_30_b1_sep16_scaffold_299_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

10248..11435
DNA (1188bp) protein (396aa)
Radical SAM domain protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CWR8_9BACT
Radical SAM domain protein {ECO:0000313|EMBL:EDY21860.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
thiH; thiamine biosynthesis enzyme ThiH or related uncharacterized enzyme
PLM2_30_b1_sep16_scaffold_299_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

11526..12362
DNA (837bp) protein (279aa)
Chorismate dehydratase {ECO:0000256|HAMAP-Rule:MF_00995}; EC=4.2.1.151 {ECO:0000256|HAMAP-Rule:MF_00995};; Menaquinone biosynthetic enzyme MqnA {ECO:0000256|HAMAP-Rule:MF_00995}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CWR7_9BACT
hypothetical protein
PLM2_30_b1_sep16_scaffold_299_20
unknown

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comp(12392..12916)
DNA (525bp) protein (175aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_299_21
unknown

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13044..13235
DNA (192bp) protein (64aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_299_22
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

13225..14934
DNA (1710bp) protein (570aa)
single-stranded-DNA-specific exonuclease RecJ Tax=Verrucomicrobium spinosum RepID=UPI00017452AB
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:CDD98004.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia sp. CAG:344.;"
single-stranded-DNA-specific exonuclease RecJ
PLM2_30_b1_sep16_scaffold_299_23
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

15006..17117
DNA (2112bp) protein (704aa)
ATP-dependent DNA helicase RecG Tax=Chthoniobacter flavus Ellin428 RepID=B4D2B7_9BACT
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EDY19357.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
DEAD/DEAH box helicase
PLM2_30_b1_sep16_scaffold_299_24
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

17117..18661
DNA (1545bp) protein (515aa)
degQ; protease DegQ (EC:3.4.21.-)
MucD bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_41_22_curated
PLM2_30_b1_sep16_scaffold_299_25
Neochlamydia sp. EPS4, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(18658..19377)
DNA (720bp) protein (240aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036BC832
PqqC-like protein {ECO:0000313|EMBL:KIC75250.1}; species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. EPS4.;"
coenzyme PQQ synthesis protein C family protein
PLM2_30_b1_sep16_scaffold_299_26
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(19483..22653)
DNA (3171bp) protein (1057aa)
Trehalose synthase Tax=Chthoniobacter flavus Ellin428 RepID=B4CZ69_9BACT
Trehalose synthase {ECO:0000313|EMBL:EDY20760.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
trehalose synthase
PLM2_30_b1_sep16_scaffold_299_27
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

22805..23479
DNA (675bp) protein (225aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Chthoniobacter flavus Ellin428 RepID=B4D199_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EDY19791.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ECF subfamily RNA polymerase sigma-24 factor
PLM2_30_b1_sep16_scaffold_299_28
unknown

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23469..23705
DNA (237bp) protein (79aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_299_29
unknown

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comp(23726..24217)
DNA (492bp) protein (164aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_299_30
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(24219..24614)
DNA (396bp) protein (132aa)
ATP-dependent Clp protease adapter protein ClpS Tax=Chthoniobacter flavus Ellin428 RepID=B4DBP2_9BACT
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
clpS; ATP-dependent Clp protease adaptor protein
Displaying items 1-30 of 39 in total

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