ggKbase home page

PLM2_30_b1_sep16_scaffold_401

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_b1_sep16_scaffold_401_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

1..624
DNA (624bp) protein (208aa)
RNA-metabolising metallo-beta-lactamase Tax=Chthoniobacter flavus Ellin428 RepID=B4CYG0_9BACT
RNA-metabolising metallo-beta-lactamase {ECO:0000313|EMBL:EDY20501.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
beta-lactamase
PLM2_30_b1_sep16_scaffold_401_2
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

690..1454
DNA (765bp) protein (255aa)
xth; exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III Tax=Cystobacter fuscus DSM 2262 RepID=S9PDZ1_9DELT
Exodeoxyribonuclease III {ECO:0000313|EMBL:KFA89899.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
PLM2_30_b1_sep16_scaffold_401_3

Not on your lists

1561..3507
DNA (1947bp) protein (649aa)
Lipase maturation factor {ECO:0000313|EMBL:AIA16675.1}; Flags: Fragment;; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein bin=bin1_lowGC species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
PLM2_30_b1_sep16_scaffold_401_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

3786..4109
DNA (324bp) protein (108aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D008_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20322.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Mll3692 protein
PLM2_30_b1_sep16_scaffold_401_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

4128..4559
DNA (432bp) protein (144aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D007_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20321.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM2_30_b1_sep16_scaffold_401_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

4517..4909
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D006_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20320.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PLM2_30_b1_sep16_scaffold_401_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

4976..6085
DNA (1110bp) protein (370aa)
Twitching motility protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D005_9BACT
Twitching motility protein {ECO:0000313|EMBL:EDY20319.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
twitching motility protein
PLM2_30_b1_sep16_scaffold_401_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

6098..7264
DNA (1167bp) protein (389aa)
Twitching motility protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D003_9BACT
Twitching motility protein {ECO:0000313|EMBL:EDY20317.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
twitching motility protein
PLM2_30_b1_sep16_scaffold_401_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(7374..8414)
DNA (1041bp) protein (347aa)
Zinc-binding alcohol dehydrogenase family protein Tax=Chthoniobacter flavus Ellin428 RepID=B4DBA9_9BACT
Zinc-binding alcohol dehydrogenase family protein {ECO:0000313|EMBL:EDY16297.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
NAD-dependent alcohol dehydrogenase
PLM2_30_b1_sep16_scaffold_401_10
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8572..11943)
DNA (3372bp) protein (1124aa)
Cation/multidrug efflux pump Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C2F7_DESTA
cation/multidrug efflux pump
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM2_30_b1_sep16_scaffold_401_11
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11945..13165)
DNA (1221bp) protein (407aa)
RND family efflux transporter, MFP subunit Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C2F6_DESTA
RND family efflux transporter, MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AFM23747.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
PLM2_30_b1_sep16_scaffold_401_12
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13162..13716)
DNA (555bp) protein (185aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI000373D743
slyA; transcriptional regulator, MarR family
Tax=RBG_16_Gamma2_60_9_curated
PLM2_30_b1_sep16_scaffold_401_13
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(13768..15201)
DNA (1434bp) protein (478aa)
4-amino-4-deoxy-L-arabinose transferase/PMT family glycosyltransferase Tax=Verrucomicrobium spinosum RepID=UPI0001744955
hypothetical protein
Tax=GWF2_Lentisphaerae_49_21_curated
PLM2_30_b1_sep16_scaffold_401_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

15361..16611
DNA (1251bp) protein (417aa)
NusA antitermination factor Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ1_9BACT
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
nusA; transcription elongation factor
PLM2_30_b1_sep16_scaffold_401_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

16666..18909
DNA (2244bp) protein (748aa)
Translation initiation factor IF-2 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ2_9BACT
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
infB; translation initiation factor 2, GTPase
PLM2_30_b1_sep16_scaffold_401_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

18983..19333
DNA (351bp) protein (117aa)
Ribosome-binding factor A Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ3_9BACT
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ribosome-binding factor A
PLM2_30_b1_sep16_scaffold_401_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

19419..20402
DNA (984bp) protein (328aa)
Phosphoesterase RecJ domain protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ4_9BACT
Phosphoesterase RecJ domain protein {ECO:0000313|EMBL:EDY20595.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
phosphoesterase RecJ domain-containing protein
PLM2_30_b1_sep16_scaffold_401_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

20377..21102
DNA (726bp) protein (242aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
tRNA pseudouridine synthase B Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ5_9BACT
tRNA pseudouridine synthase B
PLM2_30_b1_sep16_scaffold_401_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21099..22049
DNA (951bp) protein (317aa)
riboflavin biosynthesis protein RibF Tax=Verrucomicrobium spinosum RepID=UPI0001745B5F
riboflavin biosynthesis protein RibF
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM2_30_b1_sep16_scaffold_401_20
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

22252..22941
DNA (690bp) protein (230aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pedosphaera parvula Ellin514 RepID=B9XQ22_9BACT
DNA-directed RNA polymerase subunit sigma24
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PLM2_30_b1_sep16_scaffold_401_21

Not on your lists

22952..23284
DNA (333bp) protein (111aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48716.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM2_30_b1_sep16_scaffold_401_22
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(23541..23810)
DNA (270bp) protein (90aa)
Uncharacterized protein Tax=Microcoleus vaginatus FGP-2 RepID=F5UFQ4_9CYAN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM2_30_b1_sep16_scaffold_401_23
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(23807..24055)
DNA (249bp) protein (83aa)
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM2_30_b1_sep16_scaffold_401_24
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24734..25093)
DNA (360bp) protein (120aa)
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM2_30_b1_sep16_scaffold_401_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(25098..25634)
DNA (537bp) protein (179aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pedosphaera parvula Ellin514 RepID=B9XK22_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF59845.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 factor
PLM2_30_b1_sep16_scaffold_401_26
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25644..26303)
DNA (660bp) protein (220aa)
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
PLM2_30_b1_sep16_scaffold_401_trna_1
unknown

Not on your lists

26428..26500
DNA (73bp)
transferRNA Gly
PLM2_30_b1_sep16_scaffold_401_27
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

26649..27410
DNA (762bp) protein (254aa)
Uncharacterized protein Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FHI8_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE87372.1}; species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
PLM2_30_b1_sep16_scaffold_401_28
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

27589..28665
DNA (1077bp) protein (359aa)
Nucleoside diphosphate kinase {ECO:0000256|RuleBase:RU004013}; EC=2.7.4.6 {ECO:0000256|RuleBase:RU004013};; species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
Nucleoside diphosphate kinase Tax=Methylacidiphilum fumariolicum SolV RepID=I0JW78_9BACT
nucleoside diphosphate kinase
PLM2_30_b1_sep16_scaffold_401_29
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

28698..29861
DNA (1164bp) protein (388aa)
Aminotransferase class I and II Tax=Chthoniobacter flavus Ellin428 RepID=B4D0L2_9BACT
Aminotransferase class I and II {ECO:0000313|EMBL:EDY19874.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
class I and II aminotransferase
Displaying items 1-30 of 34 in total

View Taxonomy