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PLM2_30_b1_sep16_scaffold_819

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_b1_sep16_scaffold_819_1
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

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comp(3..746)
DNA (744bp) protein (248aa)
hypothetical protein Tax=Verrucomicrobium sp. 3C RepID=UPI00035F98EE
integrase family protein
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
PLM2_30_b1_sep16_scaffold_819_trna_1
unknown

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864..936
DNA (73bp)
transferRNA Met
PLM2_30_b1_sep16_scaffold_819_2
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1072..5748)
DNA (4677bp) protein (1559aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Sensory histidine kinase Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUS6_9RHIZ
sensor histidine kinase/response regulator
PLM2_30_b1_sep16_scaffold_819_3
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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comp(6073..6624)
DNA (552bp) protein (184aa)
Uncharacterized protein Tax=Pandoraea sp. SD6-2 RepID=R7WZC8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:GAN34828.1}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_819_4
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(6724..7491)
DNA (768bp) protein (256aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D7G9_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
PLM2_30_b1_sep16_scaffold_819_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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7509..8411
DNA (903bp) protein (301aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase Tax=Chthoniobacter flavus Ellin428 RepID=B4CW33_9BACT
PLM2_30_b1_sep16_scaffold_819_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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8508..9422
DNA (915bp) protein (305aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
4-hydroxy-tetrahydrodipicolinate synthase Tax=Chthoniobacter flavus Ellin428 RepID=B4CW35_9BACT
dapA; dihydrodipicolinate synthase/N-acetylneuraminate lyase
PLM2_30_b1_sep16_scaffold_819_7
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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9419..10105
DNA (687bp) protein (229aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia sp. CAG:344.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase Tax=Akkermansia sp. CAG:344 RepID=R7E698_9BACT
PLM2_30_b1_sep16_scaffold_819_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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10163..10663
DNA (501bp) protein (167aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Tax=Chthoniobacter flavus Ellin428 RepID=B4CW37_9BACT
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:EDY21629.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
PLM2_30_b1_sep16_scaffold_819_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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10831..11613
DNA (783bp) protein (261aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase Tax=Chthoniobacter flavus Ellin428 RepID=B4CW38_9BACT
PLM2_30_b1_sep16_scaffold_819_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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11629..12678
DNA (1050bp) protein (350aa)
OmpA/MotB domain protein Tax=Verrucomicrobium spinosum RepID=UPI000174474A
OmpA/MotB domain protein {ECO:0000313|EMBL:EDY19137.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ompA; Outer membrane protein or related peptidoglycan-associated (lipo)protein
PLM2_30_b1_sep16_scaffold_819_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(12784..13350)
DNA (567bp) protein (189aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CY09_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21157.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
gspG; general secretion pathway protein G
Displaying 12 items

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