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PLM2_30_b1_sep16_scaffold_950

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_30_b1_sep16_scaffold_950_1
unknown

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comp(2..340)
DNA (339bp) protein (113aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_950_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(355..924)
DNA (570bp) protein (190aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A05_SOLUE
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABJ82121.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM2_30_b1_sep16_scaffold_950_3
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1214..2344)
DNA (1131bp) protein (377aa)
hypothetical protein Tax=Burkholderia sp. JPY347 RepID=UPI000373F029
Uncharacterized protein {ECO:0000313|EMBL:ETW92112.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM2_30_b1_sep16_scaffold_950_4
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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2564..2971
DNA (408bp) protein (136aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4YBR2_SORCE
Ferredoxin, 2Fe-2S {ECO:0000313|EMBL:EYF02932.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_950_5
Janibacter sp. HTCC2649, Janibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3438..3917
DNA (480bp) protein (160aa)
Uncharacterized protein Tax=Janibacter sp. HTCC2649 RepID=A3TQX2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EAP97568.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Janibacter.;" source="Janibacter sp. HTCC2649.;"
type VI secretion system effector
PLM2_30_b1_sep16_scaffold_950_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3962..5302
DNA (1341bp) protein (447aa)
Uncharacterized protein Tax=Nitrosospira sp. APG3 RepID=M5DQ22_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61550.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
PLM2_30_b1_sep16_scaffold_950_7
unknown

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5548..5745
DNA (198bp) protein (66aa)

This feature has no annotations

PLM2_30_b1_sep16_scaffold_950_8

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comp(5705..6667)
DNA (963bp) protein (321aa)
Endonuclease/exonuclease/phosphatase family protein Tax=Dokdonia donghaensis MED134 RepID=A2TQU1_9FLAO
Marine sediment metagenome DNA, contig: S01H1_L05421 {ECO:0000313|EMBL:GAF80379.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
endonuclease/exonuclease/phosphatase family protein
PLM2_30_b1_sep16_scaffold_950_9
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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comp(6768..7007)
DNA (240bp) protein (80aa)
Putative uncharacterized protein bin=GWF2_Ignavibacteria_35_20 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM2_30_b1_sep16_scaffold_950_10
R_Acidobacteria_60_20, Acidobacteria, Bacteria

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7782..8153
DNA (372bp) protein (124aa)
Secreted protein bin=GWF2_Ignavibacteria_35_20 species=Gramella forsetii genus=Gramella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM2_30_b1_sep16_scaffold_950_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(8693..9382)
DNA (690bp) protein (230aa)
Caffeoyl-CoA O-methyltransferase {ECO:0000313|EMBL:EEF59864.1}; EC=2.1.1.104 {ECO:0000313|EMBL:EEF59864.1};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Caffeoyl-CoA O-methyltransferase Tax=Pedosphaera parvula Ellin514 RepID=B9XK41_9BACT
O-methyltransferase
PLM2_30_b1_sep16_scaffold_950_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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10283..11527
DNA (1245bp) protein (415aa)
Phospholipase D/Transphosphatidylase Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJZ2_THIDA
phospholipase D/transphosphatidylase
Phospholipase D/Transphosphatidylase {ECO:0000313|EMBL:AAZ97004.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
PLM2_30_b1_sep16_scaffold_950_13
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11618..12334
DNA (717bp) protein (239aa)
Endonuclease/exonuclease/phosphatase Tax=Methylobacterium extorquens (strain PA1) RepID=A9VYE3_METEP
Endonuclease {ECO:0000313|EMBL:KFG69017.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
endonuclease/exonuclease/phosphatase
PLM2_30_b1_sep16_scaffold_950_14
unknown

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comp(12471..12563)
DNA (93bp) protein (31aa)

This feature has no annotations

Displaying 14 items

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