ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_10108

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_10108_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(3..269)
DNA (267bp) protein (89aa)
Ferric uptake regulation protein Fur Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A364_PELCD
fur; ferric uptake regulation protein Fur
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10108_2
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(429..1928)
DNA (1500bp) protein (500aa)
Uncharacterized protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L6L8_9BACT
peptidase M16
Tax=RBG_16_NC10_65_8_curated
PLM4_65_b1_redo_sep16_scaffold_10108_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(1954..3453)
DNA (1500bp) protein (500aa)
Uncharacterized protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LFY7_9BACT
peptidase M16 domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10108_4
GWA2_Deltaproteobacteria_55_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3749..4348
DNA (600bp) protein (200aa)
LemA family protein bin=GWC2_Deltaproteobacteria_42_51 species=Thermosipho africanus genus=Thermosipho taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
LemA family protein
Tax=GWA2_Deltaproteobacteria_55_10_curated
PLM4_65_b1_redo_sep16_scaffold_10108_5
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

4371..5519
DNA (1149bp) protein (383aa)
Protease HtpX homolog bin=GWC2_Ignavibacteria_56_12 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
HtpX-2 peptidase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_65_b1_redo_sep16_scaffold_10108_6
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(5547..6341)
DNA (795bp) protein (265aa)
Putative esterase/lipase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLT1_9BACT
esterase/lipase
Putative esterase/lipase {ECO:0000313|EMBL:CBE69988.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_10108_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

6396..7355
DNA (960bp) protein (320aa)
Kelch repeat-containing protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHL5_9BACT
Kelch repeat-containing protein
Kelch repeat-containing protein {ECO:0000313|EMBL:CBE67148.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_10108_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

7479..8660
DNA (1182bp) protein (394aa)
Putative Dehydrogenases Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHM6_9BACT
Dehydrogenases
Putative Dehydrogenases {ECO:0000313|EMBL:CBE67159.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_10108_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8672..9859
DNA (1188bp) protein (396aa)
actP; copper-transporting P-type ATPase (EC:3.6.3.4)
copA; Cu(2+)-binding/translocating P-type ATPase (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM4_65_b1_redo_sep16_scaffold_10108_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

9921..11219
DNA (1299bp) protein (433aa)
actP; copper-transporting P-type ATPase (EC:3.6.3.4)
Copper-transporting P-type ATPase {ECO:0000313|EMBL:CBE67160.1}; EC=3.6.3.4 {ECO:0000313|EMBL:CBE67160.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Copper-transporting P-type ATPase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHM7_9BACT
PLM4_65_b1_redo_sep16_scaffold_10108_11
R_NC10_66_22, NC10, Bacteria

Not on your lists

11588..11929
DNA (342bp) protein (114aa)
hypothetical protein bin=bin3_NC10 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_10108_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

11933..12043
DNA (111bp) protein (37aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHM8_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67161.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_10108_13
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12123..12356
DNA (234bp) protein (78aa)
YHS domain-containing protein Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZXC5_MAHA5
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_10108_14
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

12751..12978
DNA (228bp) protein (76aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YS7_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
Displaying 14 items

View Taxonomy