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PLM4_65_b1_redo_sep16_scaffold_3602

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3602_1
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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1..1221
DNA (1221bp) protein (407aa)
Uncharacterized protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJQ9_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY48717.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
PLM4_65_b1_redo_sep16_scaffold_3602_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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1239..1826
DNA (588bp) protein (196aa)
FMN-binding domain-containing protein bin=bin1_lowGC species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin1_lowGC organism_group=Unknown_CP
FMN-binding domain-containing protein
Tax=CSP1_2_Dadabacteria
PLM4_65_b1_redo_sep16_scaffold_3602_3
Congregibacter litoralis, Congregibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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1981..2853
DNA (873bp) protein (291aa)
Membrane-associated lipoprotein involved in thiamine biosynthesis Tax=Congregibacter litoralis KT71 RepID=A4A898_9GAMM
Membrane-associated lipoprotein involved in thiamine biosynthesis {ECO:0000313|EMBL:EAQ97893.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Congregibacter.;" source="Congregibacter litoralis KT71.;"
apbE; putative thiamine biosynthesis lipoprotein
PLM4_65_b1_redo_sep16_scaffold_3602_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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2850..3383
DNA (534bp) protein (178aa)
hypothetical protein bin=bin1_lowGC species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM4_65_b1_redo_sep16_scaffold_3602_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(3390..4322)
DNA (933bp) protein (311aa)
Cation diffusion facilitator family transporter Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLR5_9BACT
Cation diffusion facilitator family transporter
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:CBE69972.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_3602_6
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(4337..5191)
DNA (855bp) protein (285aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLR4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69971.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_3602_7
R_NC10_66_22, NC10, Bacteria

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comp(5431..6591)
DNA (1161bp) protein (387aa)
Putative uncharacterized protein Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N1A2_ANATU
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_3602_8
R_NC10_66_22, NC10, Bacteria

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6825..7133
DNA (309bp) protein (103aa)
Uncharacterized protein Tax=Holophaga foetida DSM 6591 RepID=H1P192_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_3602_9
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(7130..7816)
DNA (687bp) protein (229aa)
nucleotidase yqfW (EC:3.1.3.-)
Putative nucleotidase yqfW {ECO:0000313|EMBL:CBE69970.1}; EC=3.1.3.- {ECO:0000313|EMBL:CBE69970.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative nucleotidase yqfW Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLR3_9BACT
PLM4_65_b1_redo_sep16_scaffold_3602_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(7813..10788)
DNA (2976bp) protein (992aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLR2_9BACT
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3602_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(11086..11766)
DNA (681bp) protein (227aa)
queC; Queuosine biosynthesis protein queC (EC:3.5.-.-)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
7-cyano-7-deazaguanine synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMR4_9BACT
PLM4_65_b1_redo_sep16_scaffold_3602_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(11766..12407)
DNA (642bp) protein (214aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
7-carboxy-7-deazaguanine synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMR5_9BACT
radical SAM protein
PLM4_65_b1_redo_sep16_scaffold_3602_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(12454..12765)
DNA (312bp) protein (104aa)
Amino acid/polyamine/organocation transporter, APC superfamily bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_b1_redo_sep16_scaffold_3602_14
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

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comp(12895..14124)
DNA (1230bp) protein (410aa)
chromate transporter; K07240 chromate transporter bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin3_NC10 organism_group=NC10
chromate transporter
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
PLM4_65_b1_redo_sep16_scaffold_3602_15
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(14562..16061)
DNA (1500bp) protein (500aa)
Serine protease do-like (EC:3.4.21.-)
Putative Serine protease do-like {ECO:0000313|EMBL:CBE70188.1}; EC=3.4.21.- {ECO:0000313|EMBL:CBE70188.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative Serine protease do-like Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMR6_9BACT
PLM4_65_b1_redo_sep16_scaffold_3602_16
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

16453..17013
DNA (561bp) protein (187aa)
Uncharacterized protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1F4_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ38071.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM4_65_b1_redo_sep16_scaffold_3602_17
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(17647..18126)
DNA (480bp) protein (160aa)
SsrA-binding protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJP9_9BACT
smpB; trans-translation protein, binds tmRNA and tRNA (SsrA-binding protein)
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_3602_18
unknown

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comp(18433..18552)
DNA (120bp) protein (40aa)

This feature has no annotations

Displaying 18 items

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