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PLM4_65_b1_redo_sep16_scaffold_824

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_824_1
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(146..1819)
DNA (1674bp) protein (558aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123, ECO:0000313|EMBL:CBE68568.1};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Arginine--tRNA ligase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFN7_9BACT
PLM4_65_b1_redo_sep16_scaffold_824_2
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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comp(2211..3680)
DNA (1470bp) protein (490aa)
Phosphoglucosamine mutase {ECO:0000313|EMBL:ABX05205.1}; EC=5.4.2.10 {ECO:0000313|EMBL:ABX05205.1};; species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
Phosphoglucosamine mutase Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B096_HERA2
phosphoglucosamine mutase
PLM4_65_b1_redo_sep16_scaffold_824_3
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(3718..4056)
DNA (339bp) protein (113aa)
Rhodanese-like Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFN9_9BACT
Rhodanese-like
Rhodanese-like {ECO:0000313|EMBL:CBE68570.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_824_4
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(4158..5228)
DNA (1071bp) protein (357aa)
Putative Alpha/beta hydrolase fold Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFP0_9BACT
Alpha/beta hydrolase fold
Putative Alpha/beta hydrolase fold {ECO:0000313|EMBL:CBE68571.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_824_5
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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5420..6589
DNA (1170bp) protein (390aa)
hopanoid biosynthesis associated glycosyl transferase protein HpnI (EC:2.4.1.80)
Hopanoid biosynthesis associated glycosyl transferase protein HpnI Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M6X9_GEODF
Glycosyltransferase HpnI {ECO:0000313|EMBL:ACM22000.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_b1_redo_sep16_scaffold_824_6
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6520..7425)
DNA (906bp) protein (302aa)
Hopanoid biosynthesis associated protein HpnK Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NHT0_DESAR
hopanoid biosynthesis associated protein HpnK
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_b1_redo_sep16_scaffold_824_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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7804..8640
DNA (837bp) protein (279aa)
Squalene/phytoene synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFP1_9BACT
squalene/phytoene synthase
Squalene/phytoene synthase {ECO:0000313|EMBL:CBE68572.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_824_8
R_NC10_66_22, NC10, Bacteria

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8698..8892
DNA (195bp) protein (65aa)
Uncharacterized protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_824_9
R_NC10_66_22, NC10, Bacteria

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8893..9171
DNA (279bp) protein (93aa)
hypothetical protein bin=bin3_NC10 species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_824_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(9203..9802)
DNA (600bp) protein (200aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFP2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68573.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_824_11
R_NC10_66_22, NC10, Bacteria

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comp(9979..10575)
DNA (597bp) protein (199aa)
AraD; L-fuculose phosphate aldolase (EC:4.1.2.17)
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D3S8_PELTS
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_824_12
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10562..11188)
DNA (627bp) protein (209aa)
Deacetylase bin=bin5_DeltaP species=Archaeoglobus sulfaticallidus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=bin5_DeltaP organism_group=Deltaproteobacteria
histone deacetylase superfamily protein
Tax=CG_Delta_02
PLM4_65_b1_redo_sep16_scaffold_824_13
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11216..11434)
DNA (219bp) protein (73aa)
Deacetylase bin=bin5_DeltaP species=Archaeoglobus sulfaticallidus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=bin5_DeltaP organism_group=Deltaproteobacteria
histone deacetylase superfamily protein
Tax=CSP1_8_Deltaproteobacteria
PLM4_65_b1_redo_sep16_scaffold_824_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(11615..12064)
DNA (450bp) protein (150aa)
N-acetylglutamate synthase (EC:2.3.1.1)
N-acetylglutamate synthase {ECO:0000313|EMBL:CBE68575.1}; EC=2.3.1.1 {ECO:0000313|EMBL:CBE68575.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
N-acetylglutamate synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFP4_9BACT
PLM4_65_b1_redo_sep16_scaffold_824_15
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(12073..13224)
DNA (1152bp) protein (384aa)
rtcA; RNA 3'-terminal phosphate cyclase (RNA-3'-phosphate cyclase) (RNA cyclase) (EC:6.5.1.4)
RNA 3'-terminal phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200}; Short=RNA cyclase {ECO:0000256|HAMAP-Rule:MF_00200};; Short=RNA-3'-phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200};; EC=6.5.1.4 {ECO:0000256|HAMAP-Rule:MF_00200, ECO:0000313|EMBL:CBE68576.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
RNA 3'-terminal phosphate cyclase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFP5_9BACT
PLM4_65_b1_redo_sep16_scaffold_824_16
CSP1_5_NC10, NC10, Bacteria

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comp(13248..13622)
DNA (375bp) protein (125aa)
Thioesterase superfamily protein bin=GWF2_Methylomirabilis_70_14 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioesterase superfamily protein
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_824_17
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(13774..14178)
DNA (405bp) protein (135aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFP7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68578.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_824_18
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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14354..15391
DNA (1038bp) protein (346aa)
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; K00015 glyoxylate reductase [EC:1.1.1.26] bin=bin3_NC10 species=Thermotoga lettingae genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=bin3_NC10 organism_group=NC10
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (EC:1.1.1.26)
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
PLM4_65_b1_redo_sep16_scaffold_824_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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15631..17610
DNA (1980bp) protein (660aa)
Amino acid permease-associated region Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJC4_9BACT
amino acid permease-associated region
Amino acid permease-associated region {ECO:0000313|EMBL:CBE67489.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_824_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

17607..18266
DNA (660bp) protein (220aa)
Putative Trk system potassium uptake protein trkA (K(+)-uptake protein trkA) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFP9_9BACT
Trk system potassium uptake protein trkA (K(+)-uptake protein trkA)
Putative Trk system potassium uptake protein trkA (K(+)-uptake protein trkA) {ECO:0000313|EMBL:CBE68580.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_824_21
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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18268..18957
DNA (690bp) protein (230aa)
TrkA-N domain protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFQ0_9BACT
trkA-N domain-containing protein
TrkA-N domain protein {ECO:0000313|EMBL:CBE68581.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_824_22
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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19122..19451
DNA (330bp) protein (110aa)
UPF0060 membrane protein kuste4632 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q5W3_9BACT
UPF0060 membrane protein BROSI_A3445 {ECO:0000256|HAMAP-Rule:MF_00010}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_824_23
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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19489..19938
DNA (450bp) protein (150aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX00822.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Uncharacterized protein, possibly involved in aromatic compounds catabolism bin=GWF2_Methylomirabilis_70_14 species=Beggiatoa alba genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_824_24
CSP1_5_NC10, NC10, Bacteria

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comp(19962..20195)
DNA (234bp) protein (78aa)
AsnC family transcriptional regulator bin=bin3_NC10 species=Thermofilum sp. 1910b genus=Thermofilum taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=bin3_NC10 organism_group=NC10
AsnC family transcriptional regulator
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_824_25
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(20394..21056)
DNA (663bp) protein (221aa)
Alpha/beta hydrolase fold Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFQ1_9BACT
Alpha/beta hydrolase fold
Alpha/beta hydrolase fold {ECO:0000313|EMBL:CBE68582.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_824_26
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(21178..22176)
DNA (999bp) protein (333aa)
gpsA; glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394, ECO:0000313|EMBL:CBE68583.1};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFQ2_9BACT
PLM4_65_b1_redo_sep16_scaffold_824_27
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(22187..22978)
DNA (792bp) protein (264aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Prolipoprotein diacylglyceryl transferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFQ3_9BACT
PLM4_65_b1_redo_sep16_scaffold_824_28
unknown

Not on your lists

comp(23148..23258)
DNA (111bp) protein (37aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_824_29
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(23259..24242)
DNA (984bp) protein (328aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF02_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68331.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_824_30
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(24929..25330)
DNA (402bp) protein (134aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF00_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68329.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Displaying items 1-30 of 40 in total

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