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PLM4_65_b1_redo_sep16_scaffold_5163

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5163_1
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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comp(1..369)
-----------------
DNA (369bp)
protein (123aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C557_DESTA
amino acid/amide ABC transporter membrane protein 1, HAAT family
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM4_65_b1_redo_sep16_scaffold_5163_2
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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comp(397..1662)
-----------------
DNA (1266bp)
protein (422aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C558_DESTA
amino acid/amide ABC transporter substrate-binding protein, HAAT family
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM4_65_b1_redo_sep16_scaffold_5163_3
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(1817..2290)
-----------------
DNA (474bp)
protein (158aa)
Ribosomal-protein-alanine acetyltransferase, RimI-like protein (EC:2.3.1.128)
Putative Ribosomal-protein-alanine acetyltransferase, RimI-like protein {ECO:0000313|EMBL:CBE68612.1}; EC=2.3.1.128 {ECO:0000313|EMBL:CBE68612.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative Ribosomal-protein-alanine acetyltransferase, RimI-like protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFT1_9BACT
PLM4_65_b1_redo_sep16_scaffold_5163_4
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(2296..3000)
-----------------
DNA (705bp)
protein (235aa)
Peptidase M22, glycoprotease Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFT2_9BACT
peptidase M22, glycoprotease
Peptidase M22, glycoprotease {ECO:0000313|EMBL:CBE68613.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_5163_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(3024..4340)
-----------------
DNA (1317bp)
protein (439aa)
Major facilitator superfamily MFS_1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFT3_9BACT
Major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CBE68614.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_5163_6
R_NC10_66_22, NC10, Bacteria

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comp(4416..5240)
-----------------
DNA (825bp)
protein (275aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transport-associated protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_5163_7
R_NC10_66_22, NC10, Bacteria

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comp(5269..6690)
-----------------
DNA (1422bp)
protein (474aa)
serine protease; K01362 [EC:3.4.21.-] bin=bin3_NC10 species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
serine protease
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_5163_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(6716..7234)
-----------------
DNA (519bp)
protein (173aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFT4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68615.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_5163_9
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7231..8568)
-----------------
DNA (1338bp)
protein (446aa)
Malate oxidoreductase, NAD-dependent Tax=Geobacter sulfurreducens RepID=D7AMC9_GEOSK
NAD-dependent malic enzyme 1 {ECO:0000313|EMBL:AJY68535.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
mleA; malate oxidoreductase, NAD-dependent
PLM4_65_b1_redo_sep16_scaffold_5163_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(8600..10177)
-----------------
DNA (1578bp)
protein (526aa)
Putative carbohydrate kinase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFT5_9BACT
yjeF; carbohydrate kinase
Putative carbohydrate kinase {ECO:0000313|EMBL:CBE68616.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_5163_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(10202..10585)
-----------------
DNA (384bp)
protein (128aa)
acpS; acyl carrier protein synthase (ACP-CoA phosphopantetheinyltransferase)(Holo-ACP synthase) (holo-[acyl-carrier-protein] synthase (CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase)) (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071085}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071082};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Holo-[acyl-carrier-protein] synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFT6_9BACT
PLM4_65_b1_redo_sep16_scaffold_5163_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(10579..11337)
-----------------
DNA (759bp)
protein (253aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Pyridoxine 5'-phosphate synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFT7_9BACT
pdxJ; pyridoxal phosphate biosynthetic protein PdxJ (PNP synthase)
PLM4_65_b1_redo_sep16_scaffold_5163_13
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(11466..12815)
-----------------
DNA (1350bp)
protein (450aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Phosphoglucosamine mutase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFT9_9BACT
PLM4_65_b1_redo_sep16_scaffold_5163_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(12857..13519)
-----------------
DNA (663bp)
protein (221aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFU0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68621.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_5163_15
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(13668..14588)
-----------------
DNA (921bp)
protein (307aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFU2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68623.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_5163_16
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(14593..15399)
-----------------
DNA (807bp)
protein (269aa)
folP; dihydropteroate synthase (DHPS) (Dihydropteroate pyrophosphorylase) (EC:2.5.1.15)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205, ECO:0000313|EMBL:CBE68624.1};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Dihydropteroate synthase (DHPS) (Dihydropteroate pyrophosphorylase) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFU3_9BACT
PLM4_65_b1_redo_sep16_scaffold_5163_17
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(15595..17412)
-----------------
DNA (1818bp)
protein (606aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458, ECO:0000313|EMBL:CBE68625.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
ftsH; cell division protein FtsH; ATP-dependent zinc-metallo protease (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFU4_9BACT
PLM4_65_b1_redo_sep16_scaffold_5163_18
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(17620..19029)
-----------------
DNA (1410bp)
protein (470aa)
ATPase; tRNA(Ile)-lysidine synthase (EC:6.3.4.-)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
tRNA(Ile)-lysidine synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFU5_9BACT
PLM4_65_b1_redo_sep16_scaffold_5163_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(19480..20127)
-----------------
DNA (648bp)
protein (216aa)
Calcineurin-like phosphoesterase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFU9_9BACT
Calcineurin-like phosphoesterase
Calcineurin-like phosphoesterase {ECO:0000313|EMBL:CBE68630.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_5163_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(20245..20490)
-----------------
DNA (246bp)
protein (82aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFV0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68631.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_5163_21
unknown

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comp(20597..20803)
-----------------
DNA (207bp)
protein (69aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5163_22
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(20840..21634)
-----------------
DNA (795bp)
protein (265aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFV1_9BACT
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68632.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_5163_23
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(21647..22798)
-----------------
DNA (1152bp)
protein (384aa)
Xaa-Pro aminopeptidase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFV2_9BACT
Xaa-Pro aminopeptidase
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:CBE68633.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_5163_24
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(22812..23054)
-----------------
DNA (243bp)
protein (81aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFV3_9BACT
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68634.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_5163_25
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(23108..24445)
-----------------
DNA (1338bp)
protein (446aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Phosphomethylpyrimidine synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFV4_9BACT
thiC; thiamine biosynthesis protein thiC
PLM4_65_b1_redo_sep16_scaffold_5163_26
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(24772..25521)
-----------------
DNA (750bp)
protein (250aa)
Cytochrome c biogenesis protein CcdA Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHJ8_9BACT
ccdA; cytochrome c biogenesis protein CcdA
Cytochrome c biogenesis protein CcdA {ECO:0000313|EMBL:CBE67131.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_5163_27
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(25654..25791)
-----------------
DNA (138bp)
protein (46aa)
Putative Peptidase M16 domain protein, involved in ppq synthesis (PpqG) {ECO:0000313|EMBL:CBE67132.1}; EC=3.4.24.64 {ECO:0000313|EMBL:CBE67132.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative Peptidase M16 domain protein, involved in ppq synthesis (PpqG) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHJ9_9BACT
hypothetical protein
Displaying 27 items

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