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PLM4_65_b1_redo_sep16_scaffold_6896

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_6896_1
unknown

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comp(13..420)
DNA (408bp) protein (136aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_6896_2
unknown

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621..797
DNA (177bp) protein (59aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_6896_3
CSP1_5_NC10, NC10, Bacteria

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1028..1411
DNA (384bp) protein (128aa)
ArsR family transcriptional regulator bin=bin3_NC10 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
ArsR family transcriptional regulator
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_6896_4
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1411..1896
DNA (486bp) protein (162aa)
Organomercurial lyase Tax=Pseudomonas sp. K-62 RepID=I2FFZ5_9PSED
Organomercurial lyase {ECO:0000313|EMBL:GAN51014.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_6896_5
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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2077..2376
DNA (300bp) protein (100aa)
hypothetical protein Tax=Methylohalobius crimeensis RepID=UPI0003B52431
hypothetical protein
Tax=CG_Rhodocyc_01
PLM4_65_b1_redo_sep16_scaffold_6896_6
CSP1_5_NC10, NC10, Bacteria

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2781..2936
DNA (156bp) protein (52aa)
id=14431015 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_6896_7

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2940..3371
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK81065.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
id=14627478 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
PLM4_65_b1_redo_sep16_scaffold_6896_8
unknown

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3524..3676
DNA (153bp) protein (51aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_6896_9
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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3725..5077
DNA (1353bp) protein (451aa)
Pyridine nucleotide-disulphide oxidoreductase Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F4V7_ACIC5
pyridine nucleotide-disulfide oxidoreductase
Pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ACO32721.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
PLM4_65_b1_redo_sep16_scaffold_6896_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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5784..6890
DNA (1107bp) protein (369aa)
gcvT; glycine cleavage system T-protein (aminomethyltransferase) (EC:2.1.2.10)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Aminomethyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLA8_9BACT
PLM4_65_b1_redo_sep16_scaffold_6896_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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7071..7457
DNA (387bp) protein (129aa)
Glycine cleavage system H protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLA9_9BACT
gcvH; glycine cleavage system H-protein
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_6896_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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7457..8806
DNA (1350bp) protein (450aa)
gcvPA; glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) (EC:1.4.4.2)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796};; Glycine cleavage system P-protein subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Probable glycine dehydrogenase [decarboxylating] subunit 1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLB0_9BACT
PLM4_65_b1_redo_sep16_scaffold_6896_13
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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8803..10317
DNA (1515bp) protein (505aa)
gcvPB; glycine dehydrogenase [decarboxylating] subunit 2 (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2) (EC:1.4.4.2)
Probable glycine dehydrogenase (decarboxylating) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00713, ECO:0000313|EMBL:CBE67777.1};; Glycine cleavage system P-protein subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine decarboxylase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine dehydrogenase (aminomethyl-transferring) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Probable glycine dehydrogenase (decarboxylating) subunit 2 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLB1_9BACT
PLM4_65_b1_redo_sep16_scaffold_6896_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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10701..11519
DNA (819bp) protein (273aa)
thiD; bifunctional hydroxy-methylpyrimidine kinase/hydroxy-phosphomethylpyrimidine kinase (EC:2.7.4.7 2.7.1.49)
Bifunctional: hydroxy-methylpyrimidine kinase (HMP kinase) hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase) {ECO:0000313|EMBL:CBE67785.1}; EC=2.7.1.49 {ECO:0000313|EMBL:CBE67785.1};; EC=2.7.4.7 {ECO:0000313|EMBL:CBE67785.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Bifunctional: hydroxy-methylpyrimidine kinase (HMP kinase) hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLB9_9BACT
PLM4_65_b1_redo_sep16_scaffold_6896_15
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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11519..11896
DNA (378bp) protein (126aa)
nfi; endonuclease V (EC:3.1.21.7)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801, ECO:0000313|EMBL:CBE67786.1};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Endonuclease V Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLC0_9BACT
Displaying 15 items

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