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PLM4_65_b1_redo_sep16_scaffold_2111

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2111_1
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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comp(29..454)
DNA (426bp) protein (142aa)
Restriction endonuclease, type II, Eco29kI Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QIK9_BRESC
Restriction endonuclease, type II, Eco29kI
Tax=RBG_16_Chloroflexi_68_14_curated
PLM4_65_b1_redo_sep16_scaffold_2111_2
R_NC10_66_22, NC10, Bacteria

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787..1809
DNA (1023bp) protein (341aa)
yfjQ; divalent cation transport-related protein; K03284 magnesium transporter bin=bin3_NC10 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=bin3_NC10 organism_group=NC10
yfjQ; divalent cation transport-related protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2111_3
R_NC10_66_22, NC10, Bacteria

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comp(1938..2936)
DNA (999bp) protein (333aa)
hypothetical protein bin=bin7_NC10_sister species=Pseudomonas putida genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
membrane protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2111_4
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(3132..3767)
DNA (636bp) protein (212aa)
Protein dedA (Protein DSG-1) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMI9_9BACT
dedA; protein dedA (Protein DSG-1)
Protein dedA (Protein DSG-1) {ECO:0000313|EMBL:CBE70111.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2111_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(3903..5576)
DNA (1674bp) protein (558aa)
ilvD; dihydroxy-acid dehydratase (DAD) (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Dihydroxy-acid dehydratase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMI8_9BACT
PLM4_65_b1_redo_sep16_scaffold_2111_6
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(5624..6889)
DNA (1266bp) protein (422aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMI7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE70109.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2111_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(6956..8464)
DNA (1509bp) protein (503aa)
Protoporphyrinogen IX and coproporphyrinogen III oxidase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMI6_9BACT
protoporphyrinogen IX and coproporphyrinogen III oxidase
Protoporphyrinogen IX and coproporphyrinogen III oxidase {ECO:0000313|EMBL:CBE70108.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2111_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(8518..9453)
DNA (936bp) protein (312aa)
ferrochelatase (EC:4.99.1.1)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Ferrochelatase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMI5_9BACT
PLM4_65_b1_redo_sep16_scaffold_2111_9
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(9455..11395)
DNA (1941bp) protein (647aa)
Uroporphyrinogen decarboxylase {ECO:0000256|SAAS:SAAS00078187}; EC=4.1.1.37 {ECO:0000256|SAAS:SAAS00078176};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Uroporphyrinogen III synthase, uroporhyrinogen decarboxylase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMI4_9BACT
Uroporphyrinogen III synthase, uroporhyrinogen decarboxylase
PLM4_65_b1_redo_sep16_scaffold_2111_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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11675..12553
DNA (879bp) protein (293aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM4_65_b1_redo_sep16_scaffold_2111_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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12706..13800
DNA (1095bp) protein (365aa)
glycerol-3-phosphate ABC transporter ATP-binding protein; K10112 maltose/maltodextrin transport system ATP-binding protein bin=bin7_NC10_sister species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glycerol-3-phosphate ABC transporter ATP-binding protein
Tax=CSP1_6_Rokubacteria
PLM4_65_b1_redo_sep16_scaffold_2111_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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14179..15522
DNA (1344bp) protein (448aa)
Putative sugar uptake ABC transporter periplasmic solute-binding protein bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_b1_redo_sep16_scaffold_2111_13
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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15598..16626
DNA (1029bp) protein (343aa)
Uncharacterized protein Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DMD8_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:ETW99080.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
ABC transporter permease
PLM4_65_b1_redo_sep16_scaffold_2111_14
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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16631..17557
DNA (927bp) protein (309aa)
Sugar ABC transporter permease {ECO:0000313|EMBL:ETW99078.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Probable sugar ABC transporter, permease protein bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
sugar ABC transporter permease
PLM4_65_b1_redo_sep16_scaffold_2111_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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17603..18094
DNA (492bp) protein (164aa)
Uncharacterized protein Tax=Nitrospina gracilis 3/211 RepID=M1Z9P4_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_b1_redo_sep16_scaffold_2111_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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18535..20268
DNA (1734bp) protein (578aa)
malate synthase A (EC:2.3.3.9)
putative malate synthase bin=bin7_NC10_sister species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
PLM4_65_b1_redo_sep16_scaffold_2111_17
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20352..20726
DNA (375bp) protein (125aa)
Putative pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGP9_NITGG
Uncharacterized protein {ECO:0000313|EMBL:ETW95190.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_2111_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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20967..21821
DNA (855bp) protein (285aa)
Radical SAM domain-containing protein bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
radical SAM domain protein
Tax=CSP1_6_Rokubacteria
Displaying 18 items

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