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PLM4_65_b1_redo_sep16_scaffold_2122

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2122_1
R_Deltaproteobacteria_44_53, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2..649)
-----------------
DNA (648bp)
protein (216aa)
Transcriptional regulator, Crp/Fnr family bin=GWC2_Methylomirabilis_70_16 species=Chitinophaga pinensis genus=Chitinophaga taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_53_curated
PLM4_65_b1_redo_sep16_scaffold_2122_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(719..1237)
-----------------
DNA (519bp)
protein (173aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFB5_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68444.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2122_3
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(1215..2027)
-----------------
DNA (813bp)
protein (271aa)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000380E2BF
Fe-S oxidoreductase
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:CBE68445.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2122_4
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2024..3493)
-----------------
DNA (1470bp)
protein (490aa)
gltD; oxidoreductase; K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14] bin=RBG_19FT_COMBO_GAL15_69_19 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
gltD; glutamate synthase, small subunit (EC:1.4.1.13)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_2122_5
R_NC10_66_22, NC10, Bacteria

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comp(3516..3896)
-----------------
DNA (381bp)
protein (127aa)
atoC; acetoacetate metabolism regulatory protein AtoC bin=bin3_NC10 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin3_NC10 organism_group=NC10
two component, sigma54 specific, transcriptional regulator, Fis family
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2122_6
unknown

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4025..4747
-----------------
DNA (723bp)
protein (241aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2122_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(4805..5338)
-----------------
DNA (534bp)
protein (178aa)
hpt; hypoxanthine-guanine phosphoribosyltransferase (HGPRTase) (HGPRT) (EC:2.4.2.8)
Hypoxanthine-guanine phosphoribosyltransferase (HGPRTase) (HGPRT) {ECO:0000313|EMBL:CBE68446.1}; EC=2.4.2.8 {ECO:0000313|EMBL:CBE68446.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036918AE
PLM4_65_b1_redo_sep16_scaffold_2122_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(5481..6842)
-----------------
DNA (1362bp)
protein (454aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFB4_9BACT
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68443.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2122_9
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(6922..8013)
-----------------
DNA (1092bp)
protein (364aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFB5_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68444.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2122_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(8254..9177)
-----------------
DNA (924bp)
protein (308aa)
Putative lipoprotein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHB5_9BACT
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:CBE69147.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2122_11
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9464..10621)
-----------------
DNA (1158bp)
protein (386aa)
L-sorbosone dehydrogenase Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q468L9_METBF
L-sorbosone dehydrogenase
Tax=RBG_16_Deltaproteobacteria_50_11_curated
PLM4_65_b1_redo_sep16_scaffold_2122_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(10640..11608)
-----------------
DNA (969bp)
protein (323aa)
qor; quinone oxidoreductase (EC:1.6.5.5)
Quinone oxidoreductase (NADPH:quinone reductase) {ECO:0000313|EMBL:CBE69148.1}; EC=1.6.5.5 {ECO:0000313|EMBL:CBE69148.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Quinone oxidoreductase (NADPH:quinone reductase) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHB6_9BACT
PLM4_65_b1_redo_sep16_scaffold_2122_13
CSP1_5_NC10, NC10, Bacteria

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comp(11696..12730)
-----------------
DNA (1035bp)
protein (345aa)
id=14429334 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_2122_14
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12788..14080)
-----------------
DNA (1293bp)
protein (431aa)
Membrane protein, major facilitator superfamily Tax=Geobacter sulfurreducens RepID=D7AGL4_GEOSK
MFS transporter
MFS transporter {ECO:0000313|EMBL:AJE02778.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_b1_redo_sep16_scaffold_2122_15
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14151..15053)
-----------------
DNA (903bp)
protein (301aa)
histone deacetylase Tax=Arenimonas oryziterrae RepID=UPI0003B60636
Uncharacterized protein {ECO:0000313|EMBL:KFN42555.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
histone deacetylase
PLM4_65_b1_redo_sep16_scaffold_2122_16
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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15335..16351
-----------------
DNA (1017bp)
protein (339aa)
Zinc-containing alcohol dehydrogenase superfamily Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q093F8_STIAD
alcohol dehydrogenase
Zinc-containing alcohol dehydrogenase superfamily {ECO:0000313|EMBL:EAU66887.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
PLM4_65_b1_redo_sep16_scaffold_2122_17
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(16374..17579)
-----------------
DNA (1206bp)
protein (402aa)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036954D6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67575.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2122_18
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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18053..19588
-----------------
DNA (1536bp)
protein (512aa)
Putative ATP-dependent RNA helicase with P-loop hydrolase domain (RhlE gene) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJS0_9BACT
ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene)
Putative ATP-dependent RNA helicase with P-loop hydrolase domain (RhlE gene) {ECO:0000313|EMBL:CBE67503.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2122_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(19585..20277)
-----------------
DNA (693bp)
protein (231aa)
DNA repair protein radC homolog Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHR8_9BACT
radC; DNA repair protein RadC-like protein
DNA repair protein radC homolog {ECO:0000313|EMBL:CBE67201.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2122_20
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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comp(20352..20750)
-----------------
DNA (399bp)
protein (133aa)
PilT protein domain protein bin=GWF2_Nitrospirae_44_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
PilT domain-containing protein
Tax=RBG_16_Armatimonadetes_67_12_curated
PLM4_65_b1_redo_sep16_scaffold_2122_21
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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comp(20747..21010)
-----------------
DNA (264bp)
protein (88aa)
Putative uncharacterized protein Tax=uncultured prokaryote RepID=H5S980_9ZZZZ
Tax=RBG_16_Armatimonadetes_67_12_curated
PLM4_65_b1_redo_sep16_scaffold_2122_22
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(21176..21292)
-----------------
DNA (117bp)
protein (39aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHR7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67200.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2122_23
BJP_IG2158_Anaerolineales_38_74, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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comp(21362..21757)
-----------------
DNA (396bp)
protein (132aa)
type I site-specific deoxyribonuclease (EC:3.1.21.3)
Type I site-specific deoxyribonuclease Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TGP4_CALNY
Tax=BJP_IG2158_Anaerolineales_38_74
Displaying 23 items

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