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PLM4_65_b1_redo_sep16_scaffold_2308

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2308_1
uncultured gamma proteobacterium HF4000_48E10, Gammaproteobacteria, Proteobacteria, Bacteria

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1..501
DNA (501bp) protein (167aa)
Site-specific recombinases, DNA invertase Pin homologs Tax=uncultured gamma proteobacterium HF4000_48E10 RepID=E7C8T5_9GAMM
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:ADI23859.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; environmental samples.;" source="uncultured gamma proteobacterium HF4000_48E10.;"
PLM4_65_b1_redo_sep16_scaffold_2308_trna_2
unknown

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comp(464..538)
DNA (75bp)
transferRNA Glu
PLM4_65_b1_redo_sep16_scaffold_2308_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(595..945)
DNA (351bp) protein (117aa)
NIPSNAP family containing protein Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B5C4D3
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_b1_redo_sep16_scaffold_2308_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1079..2227)
DNA (1149bp) protein (383aa)
Putative uncharacterized protein bin=GWA2_Elusimicrobia_51_34 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2308_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2224..2781)
DNA (558bp) protein (186aa)
Putative transcriptional regulator, Crp/Fnr family bin=GWA2_Elusimicrobia_66_18 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
cAMP-binding protein transcriptional regulatory protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2308_5
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2981..3631)
DNA (651bp) protein (217aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
Deoxycytidine triphosphate deaminase Tax=Caenispirillum salinarum AK4 RepID=K9HAW1_9PROT
Deoxycytidine triphosphate deaminase
PLM4_65_b1_redo_sep16_scaffold_2308_6
unknown

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comp(3638..3976)
DNA (339bp) protein (113aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2308_7
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4062..4337)
DNA (276bp) protein (92aa)
Tax=RBG_13_Deltaproteobacteria_43_22_curated
PLM4_65_b1_redo_sep16_scaffold_2308_8
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

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4466..5185
DNA (720bp) protein (240aa)
Putative uncharacterized protein Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z8R8_DEHE1
hypothetical protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_65_b1_redo_sep16_scaffold_2308_9
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5728..6495
DNA (768bp) protein (256aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MM14_9BACT
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_43_22_curated
PLM4_65_b1_redo_sep16_scaffold_2308_10
Paenibacillus popilliae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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6517..7605
DNA (1089bp) protein (363aa)
Uncharacterized protein Tax=Paenibacillus popilliae ATCC 14706 RepID=M9LDC5_PAEPP
Uncharacterized protein {ECO:0000313|EMBL:GAC44337.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus popilliae ATCC 14706.;"
h16_A0011; hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2308_11

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comp(7466..8164)
DNA (699bp) protein (233aa)
Lysophospholipase Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HFQ1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KKM80979.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2308_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(8320..8700)
DNA (381bp) protein (127aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN24_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68124.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2308_13
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(8717..10615)
DNA (1899bp) protein (633aa)
Long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
Putative Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CBE68125.1}; EC=6.2.1.3 {ECO:0000313|EMBL:CBE68125.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative Long-chain-fatty-acid--CoA ligase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN25_9BACT
PLM4_65_b1_redo_sep16_scaffold_2308_14
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(10669..10941)
DNA (273bp) protein (91aa)
RNP-1 like RNA-binding protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LED5_SYNFM
RNP-1 like RNA-binding protein
Tax=RBG_13_Chloroflexi_66_10_curated
PLM4_65_b1_redo_sep16_scaffold_2308_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(11016..11798)
DNA (783bp) protein (261aa)
id=3222458 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_65_b1_redo_sep16_scaffold_2308_16
unknown

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comp(11864..12388)
DNA (525bp) protein (175aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2308_17
R_NC10_66_22, NC10, Bacteria

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12616..13398
DNA (783bp) protein (261aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_2308_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

13612..14019
DNA (408bp) protein (136aa)
Putative uncharacterized protein Tax=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) RepID=Q0VSN9_ALCBS
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_2308_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

14055..14753
DNA (699bp) protein (233aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN31_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68131.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2308_20
unknown

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14779..15039
DNA (261bp) protein (87aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2308_21
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

15153..15590
DNA (438bp) protein (146aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN32_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68132.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2308_22
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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15796..16167
DNA (372bp) protein (124aa)
Uncharacterized protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E985_GEOLS
hypothetical protein
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE {ECO:0000313|EMBL:GAM10133.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
PLM4_65_b1_redo_sep16_scaffold_2308_23
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

16624..17214
DNA (591bp) protein (197aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFI3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68514.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2308_24
unknown

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17531..17833
DNA (303bp) protein (101aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2308_25
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

17867..18709
DNA (843bp) protein (281aa)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036954D6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67575.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2308_26
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(19101..19682)
DNA (582bp) protein (194aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIQ9_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69416.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2308_27
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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20160..20363
DNA (204bp) protein (68aa)
Cold shock protein, DNA binding Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIA2_9BACT
cspA; Cold shock protein, DNA binding
Cold shock protein, DNA binding {ECO:0000313|EMBL:CBE67252.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_2308_28
unknown

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20586..20834
DNA (249bp) protein (83aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2308_trna_1
unknown

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comp(20768..20840)
DNA (73bp)
transferRNA Lys
Displaying items 1-30 of 34 in total

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