ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_7025

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_7025_1
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(1..168)
DNA (168bp) protein (56aa)
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFY5_9BACT
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein)
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) {ECO:0000313|EMBL:CBE68666.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_7025_2
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(313..873)
DNA (561bp) protein (187aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P904_9BACT
hypothetical protein
Tax=RBG_16_NC10_65_8_curated
PLM4_65_b1_redo_sep16_scaffold_7025_3
RLO_PLX_64_10, Bacteria

Not on your lists

1014..2276
DNA (1263bp) protein (421aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dioxygenase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_65_b1_redo_sep16_scaffold_7025_4
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(2677..3021)
DNA (345bp) protein (115aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN80_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE70222.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_7025_5
unknown

Not on your lists

3086..3604
DNA (519bp) protein (173aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_7025_6
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(3573..4322)
DNA (750bp) protein (250aa)
hypothetical protein; K01560 2-haloacid dehalogenase [EC:3.8.1.2] bin=bin3_NC10 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=bin3_NC10 organism_group=NC10
putative hydrolase (HAD superfamily)
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_7025_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

4528..5193
DNA (666bp) protein (222aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN81_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE70223.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_7025_8

Not on your lists

comp(5322..5717)
DNA (396bp) protein (132aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL12990.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Uncharacterized protein bin=GWF2_Geobacter_54_21 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_7025_9
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(5802..6701)
DNA (900bp) protein (300aa)
trypsin-like serine protease with C-terminal PDZ domain bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
PDZ/DHR/GLGF domain-containing protein
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_7025_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

6983..7618
DNA (636bp) protein (212aa)
hypothetical protein Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI00036210F8
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM4_65_b1_redo_sep16_scaffold_7025_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

7698..8366
DNA (669bp) protein (223aa)
Endonuclease III {ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|PIRNR:PIRNR001435};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Endonuclease III Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN82_9BACT
Endonuclease III
PLM4_65_b1_redo_sep16_scaffold_7025_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(8412..9530)
DNA (1119bp) protein (373aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMK5_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE70127.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_7025_13
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(9547..11790)
DNA (2244bp) protein (748aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMK6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE70128.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Displaying 13 items

View Taxonomy