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PLM4_65_b1_redo_sep16_scaffold_4056

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4056_1
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3..731
DNA (729bp) protein (243aa)
hypothetical protein Tax=Methylomonas sp. MK1 RepID=UPI00037BFEF6
Peptidase {ECO:0000313|EMBL:KIH77709.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
proteasome-type protease
PLM4_65_b1_redo_sep16_scaffold_4056_2
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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743..1519
DNA (777bp) protein (259aa)
hypothetical protein Tax=Methylomonas sp. MK1 RepID=UPI00037972B8
N-formylglutamate amidohydrolase
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:ADC71550.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
PLM4_65_b1_redo_sep16_scaffold_4056_3
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1549..2400
DNA (852bp) protein (284aa)
Transglutaminase domain-containing protein Tax=Azoarcus sp. KH32C RepID=H0PUX0_9RHOO
transglutaminase domain-containing protein
Transglutaminase domain-containing protein {ECO:0000313|EMBL:BAL24321.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
PLM4_65_b1_redo_sep16_scaffold_4056_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2915..4621)
DNA (1707bp) protein (569aa)
hypothetical protein Tax=Sphingomonas wittichii RepID=UPI000305E029
amidohydrolase 3
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4056_5
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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comp(4656..5963)
DNA (1308bp) protein (436aa)
Capsule synthesis protein CapA Tax=Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) RepID=D3T1S3_NATMM
capsule synthesis protein CapA
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_65_b1_redo_sep16_scaffold_4056_6
Streptomyces sviceus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(6076..7551)
DNA (1476bp) protein (492aa)
Tricarballylate dehydrogenase Tax=Streptomyces sviceus ATCC 29083 RepID=B5I3H9_9ACTO
Tricarballylate dehydrogenase {ECO:0000313|EMBL:EDY59601.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sviceus ATCC 29083.;"
tricarballylate dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_4056_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7567..8490)
DNA (924bp) protein (308aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4056_8
Streptomyces rapamycinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(8733..9110)
DNA (378bp) protein (126aa)
hypothetical protein Tax=Streptomyces rapamycinicus RepID=UPI000383149A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP52321.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rapamycinicus NRRL 5491.;"
PLM4_65_b1_redo_sep16_scaffold_4056_9
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

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comp(9709..10623)
DNA (915bp) protein (305aa)
transcriptional regulator, LysR family
Transcriptional regulator bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=GWB2_Nitrospirae_47_37_curated
PLM4_65_b1_redo_sep16_scaffold_4056_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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10672..11760
DNA (1089bp) protein (363aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein bin=GWD2_Deltaproteobacteria_55_8 species=Methylobacterium radiotolerans genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4056_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11785..12813
DNA (1029bp) protein (343aa)
hypothetical protein Tax=Streptomyces sp. R1-NS-10 RepID=UPI000376D471
cupin
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4056_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12861..13532
DNA (672bp) protein (224aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4056_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13579..14568
DNA (990bp) protein (330aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein bin=GWD2_CPR2_39_7 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_CPR2_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D1_39_7
NMT1/THI5 like domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4056_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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14611..15651
DNA (1041bp) protein (347aa)
xanthine dehydrogenase (EC:1.17.1.4)
Putative aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain protein Tax=uncultured marine microorganism HF4000_ANIW93N21 RepID=B3T365_9ZZZZ
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying 14 items

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